hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01966/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0896  ( 1765 res)   mbg01966

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HECTc    Domain Homologous to E6-AP Carboxyl Terminus   518.6   2.7e-151   1
PolyA    C-terminal domain of Poly(A)-binding protein   124.7    9.9e-33   1
ZnF_UBR1 Putative zinc finger in N-recognin, a recogn   104.9    9.2e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_UBR1   1/1     144   211 ..     1    79 []   104.9  9.2e-27
PolyA      1/1    1356  1419 ..     1    66 []   124.7  9.9e-33
HECTc      1/1    1399  1765 .]     1   407 []   518.6 2.7e-151

Alignments of top-scoring domains:
ZnF_UBR1: domain 1 of 1, from 144 to 211: score 104.9, E = 9.2e-27
                   *->dvCtyvftggevinQhlYrCkTCaldpetcvlCsdCFrsncHkgHdv
                      d+C++++tg e+inQ++++C+TC+l + ++++C++C+r +cHkgHd 
   mKIAA0896   144    DTCSFTWTGAEHINQDIFECRTCGLLE-SLCCCTECAR-VCHKGHD- 187  

                   lvslktsrgsGgiCDCGdkeAwnedlkCkahe<-*
                    ++lk+++++ ++CDC++k      +kCk ++   
   mKIAA0896   188 -CKLKRTSPT-AYCDCWEK------CKCKTLI    211  

PolyA: domain 1 of 1, from 1356 to 1419: score 124.7, E = 9.9e-33
                   *->ppqeQkqmLGErLYPkVealepneelAgKITGMLLEMDnsElLhLLe
                      p++ ++q+LGErLYP+V+a++p  ++A+KITGMLLE+ +++lL+LL 
   mKIAA0896  1356    PLPAHRQALGERLYPRVQAMQP--AFASKITGMLLELSPAQLLLLLA 1400 

                   speaLkaKVdEAleVLrsh<-*
                   s+++L+a+VdEA+e + +h   
   mKIAA0896  1401 SEDSLRARVDEAMELIIAH    1419 

HECTc: domain 1 of 1, from 1399 to 1765: score 518.6, E = 2.7e-151
                   *->nsspddLkkrskeaLeIef..........v.vnehgvgEeglDgGGv
                        s+d L++r++ea+e++  ++++++ +++ ++++++ +e +++ + 
   mKIAA0896  1399    LASEDSLRARVDEAMELIIahgrengadsIlDLGLLDSSEKVQENRK 1445 

                   trEFffllskelfnp....tdygLFryspndnaeksktiYigrlrylLfp
                   ++ +  +++++ + ++++++d+++++y+p+++               +f+
   mKIAA0896  1446 RHGSSRSVVDMDLEDtddgDDNAPLFYQPGKR---------------GFY 1480 

                   nPsagfaneehlaavyFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkp
                    P++g ++e++l+  +Fr+iGr+lG++l++n+l++  ++r+++K LLg++
   mKIAA0896  1481 TPRPGKNTEARLN--CFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRK 1528 

                   kgtdvtlhDleslDPelyksLvwLilvrrKleleeDlseeskslendite
                       v++hD++++DP++y+sL++Li           l+++s++ +++++ 
   mKIAA0896  1529 ----VNWHDFAFFDPVMYESLRQLI-----------LASQSSDADAVFSA 1563 

                   veldmaLtFsivlesdfgevkvvELkpGGsnipVTeeNkkEYVhlvieyr
                     +d  L F+i+l++ ++++++vEL+p+G nipVT +N++EYV++++e+r
   mKIAA0896  1564 --MD--LAFAIDLCK-EEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHR 1608 

                   lnkgvekqleAFreGFseVipeelLrylFdeeELeLLicGleeeidvddL
                   +    e++l+A+r+G+++V+p+++L++l ++e+++LL++G++ e++v++L
   mKIAA0896  1609 MLVVAEQPLHAMRKGLLDVLPKNSLEDL-TAEDFRLLVNGCG-EVNVQML 1656 

                   ksnTeyrggYtensqti.rfkkwFWevvesFtneerrkLLqFVTGssrlP
                   +s+T++++++ en +++ +fk+wFW++ve++++ er++L++F+T+s++lP
   mKIAA0896  1657 ISFTSFNDESGENAEKLlQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLP 1706 

                   ASvgGFaaLspsNGpqkFtIrkagsetlsdddrLPtAhTCfNrLkLPpYs
                   AS++GF++++      ++tIr+       dd++LPtA+TC++rL++P Ys
   mKIAA0896  1707 ASEEGFQPMP------SITIRPP------DDQHLPTANTCISRLYVPLYS 1744 

                   SkeiLreKLLlAInegRiggeGFgls<-*
                   Sk+iL++KLLlAI+      ++Fg++   
   mKIAA0896  1745 SKQILKQKLLLAIKT-----KNFGFV    1765 

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