hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg01966/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0896 ( 1765 res) mbg01966 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- HECT HECT-domain (ubiquitin-transferase) 356.1 3.7e-103 1 zf-UBR1 Putative zinc finger in N-recognin 96.5 5.1e-25 1 PABP Poly-adenylate binding protein, unique domai 95.7 8.9e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-UBR1 1/1 144 211 .. 1 82 [] 96.5 5.1e-25 PABP 1/1 1340 1416 .. 1 82 [] 95.7 8.9e-25 HECT 1/1 1452 1765 .] 1 366 [] 356.1 3.7e-103 Alignments of top-scoring domains: zf-UBR1: domain 1 of 1, from 144 to 211: score 96.5, E = 5.1e-25 *->klCghvEGfkpgetiNQnlYrCkTCsldpGetcvlCedCFrsscHkg ++C+++ ++++e+iNQ +++C+TC+l ++++C++C+r +cHkg mKIAA0896 144 DTCSFT--WTGAEHINQDIFECRTCGLLE--SLCCCTECAR-VCHKG 185 HdvyvslktsrgsGgiCDCGdkeAwnedlkCknhe<-* Hd ++lk+++++ ++CDC++k +kCk ++ mKIAA0896 186 HD--CKLKRTSPT-AYCDCWEK------CKCKTLI 211 PABP: domain 1 of 1, from 1340 to 1416: score 95.7, E = 8.9e-25 *->epltAsdlaDnatpekLnDhLsvqkQmLGErLYPkVeaktseeelAg +p+ ++ n + + D L ++Q+LGErLYP V+a+ ++ A mKIAA0896 1340 RPFRPASEG-NPSDDP--DPLPAHRQALGERLYPRVQAM--QPAFAS 1381 KITGMLLEipnsElLhLLESdEaLkaKVnEAiaVL<-* KITGMLLE+ +++lL LL S +L+a+V+EA++ + mKIAA0896 1382 KITGMLLELSPAQLLLLLASEDSLRARVDEAMELI 1416 HECT: domain 1 of 1, from 1452 to 1765: score 356.1, E = 3.7e-103 *->tLlsrelf.....nPdygLFeysdnseakseeddsysgyvedsytlf +++ +l ++++++ + LF ++ ++ f mKIAA0896 1452 SVVDMDLEdtddgDDNAPLF-------------------YQPGKRGF 1479 pnPlsgesnpehervlkyFkflGrilGlAlydgrllDlpFsraFyKklLm + P++g++ + + l+ F+++GrilGl+l +++l ++ ++r++ K lL mKIAA0896 1480 YTPRPGKNTEAR---LNCFRNIGRILGLCLLQNELCPITLNRHVIKVLL- 1525 agkpsigivtleDlesvDPelynSLkwllendgdKkIedsLLgs.ledve g++ v ++D++++DP++y SL++l +++ s+++ v mKIAA0896 1526 -GRK----VNWHDFAFFDPVMYESLRQLILASQS---------SdADAVF 1561 edLeLtFsveeessvgfeadarffGgtktveELkPnGrnipVTneNkeeY ++L F + + + +e +g +ve L+PnG nipVT +N++eY mKIAA0896 1562 SAMDLAF-AIDLC---KE------EGGGQVE-LIPNGVNIPVTPQNVYEY 1600 velyvdyrLnkgiekQfeAFrkGFsevipsrlLslFdpeELelLicGspe v++y+++r+ e++++A rkG+ +v+p+++L+ +++e+ +lL++G + mKIAA0896 1601 VRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCG- 1649 eiDvddLkenTeYdggYtedsp.l.ktiqwFWevleeftneeraklLqFv e++v++L+++T +++++ e+ ++l ++ +wFW+++e+++ er++l++F+ mKIAA0896 1650 EVNVQMLISFTSFNDESGENAEkLlQFKRWFWSIVEKMSMTERQDLVYFW 1699 TGssRlPvgGFkaLqgGsnGpPkFtIvrkegggdddrLPtAhTCFNrLkL T+s++lP++ + +P+ tI+ ++dd++LPtA+TC+ rL+ mKIAA0896 1700 TSSPSLPASEEGFQP-----MPSITIR----PPDDQHLPTANTCISRLYV 1740 PpYsSkeiLrekLllAInEgseGFgle<-* P YsSk+iL++kLllAI+ +++Fg++ mKIAA0896 1741 PLYSSKQILKQKLLLAIK--TKNFGFV 1765 //