hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01684/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0893  ( 1132 res)   mbg01684

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   180.5    1.6e-49   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7     809   847 ..     1    46 []    28.1   0.0013
WD40       2/7     860   902 ..     1    46 []    38.5  8.7e-07
WD40       3/7     910   954 ..     1    46 []     0.6  3.9e+02
WD40       4/7     957   995 ..     1    46 []    31.0  0.00017
WD40       5/7    1002  1041 ..     1    46 []    27.2   0.0023
WD40       6/7    1044  1083 ..     1    46 []    37.2  2.2e-06
WD40       7/7    1090  1129 ..     1    46 []    24.7    0.013

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 809 to 847: score 28.1, E = 0.0013
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  ++ tl+  t+  +V++vaf+p+g      +l a+gs+ +t+r+ 
   mKIAA0893   809    QfVCINTLE-DTQ--AVRAVAFHPSG------SLYAVGSnSKTLRVC 846  

                   d<-*
                       
   mKIAA0893   847 A    847  

WD40: domain 2 of 7, from 860 to 902: score 38.5, E = 8.7e-07
                   *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti
                      +++++  +k+++ H+g  ++++va+sp g      +lla+gs+D+ +
   mKIAA0893   860    PkQPVVRFKrnkHHKG--SIYCVAWSPCG------QLLATGSnDKYV 898  

                   rlWd<-*
                   ++     
   mKIAA0893   899 KVLP    902  

WD40: domain 3 of 7, from 910 to 954: score 0.6, E = 3.9e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs..Dgtirl
                       + +  +++ H+g   ++++af     s  ++ +l+s++ +D++i+ 
   mKIAA0893   910    AtGPDLEFSMHDG--TIRDLAFMEGPES--GGAILISAGagDCNIYT 952  

                   Wd<-*
                    d   
   mKIAA0893   953 TD    954  

WD40: domain 4 of 7, from 957 to 995: score 31.0, E = 0.00017
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++ l+ l+gHtg   ++++ +  +g       ++asgs+D+t+r+W
   mKIAA0893   957    RgQGLHALSGHTG--HILAL-YTWSG------WMIASGSqDKTVRFW 994  

                   d<-*
                   d   
   mKIAA0893   995 D    995  

WD40: domain 5 of 7, from 1002 to 1041: score 27.2, E = 0.0023
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       + +  t++g  +  +V sva++p+g      +lla+g +D+++ l+
   mKIAA0893  1002    VrVVGTTFHGTGS--AVASVAVDPSG------RLLATGQeDSSCMLY 1040 

                   d<-*
                   d   
   mKIAA0893  1041 D    1041 

WD40: domain 6 of 7, from 1044 to 1083: score 37.2, E = 2.2e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++ +++++ H++  +V+sv+fsp        ++l++gs D +i++ 
   mKIAA0893  1044    GgRMVQSYHPHSS--DVRSVRFSPGA------HYLLTGSyDMKIKVT 1082 

                   d<-*
                   d   
   mKIAA0893  1083 D    1083 

WD40: domain 7 of 7, from 1090 to 1129: score 24.7, E = 0.013
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ +l++   H++   V  ++++  +        ++s+s D+t+ lW
   mKIAA0893  1090    KqLPLMVVGEHKD--KVIQCRWHTQD------LSFLSSSaDRTVTLW 1128 

                   d<-*
                       
   mKIAA0893  1129 T    1129 

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