hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01684/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0893  ( 1132 res)   mbg01684

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       168.0    1.6e-46   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7     811   847 ..     1    38 []    18.5     0.16
WD40       2/7     865   902 ..     1    38 []    31.9  1.5e-05
WD40       3/7     912   952 ..     1    38 []    10.5       10
WD40       4/7     959   995 ..     1    38 []    30.1  5.2e-05
WD40       5/7    1004  1041 ..     1    38 []    24.6   0.0023
WD40       6/7    1046  1083 ..     1    38 []    34.5  2.4e-06
WD40       7/7    1092  1129 ..     1    38 []    24.7   0.0021

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 811 to 847: score 18.5, E = 0.16
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       c+ +l++   +V++vaf+p+ g+l a gS  +t+++     
   mKIAA0893   811    VCINTLeDT-QAVRAVAFHPS-GSLYAVGSNSKTLRVCA    847  

WD40: domain 2 of 7, from 865 to 902: score 31.9, E = 1.5e-05
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                         +  ++H+++++cva+sp  g+lla+gS D+ +k+     
   mKIAA0893   865    VRFKRNkHHKGSIYCVAWSPC-GQLLATGSNDKYVKVLP    902  

WD40: domain 3 of 7, from 912 to 952: score 10.5, E = 10
                   *->eclavl.gHtspVtcvafspd...sgpllasgSrDgtikiWd<-*
                       +  +++ H ++++++af   ++++g +l+s+++ g + i+    
   mKIAA0893   912    GPDLEFsMHDGTIRDLAFMEGpesGGAILISAGA-GDCNIYT    952  

WD40: domain 4 of 7, from 959 to 995: score 30.1, E = 5.2e-05
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + l+ l+gHt+ + ++        ++asgS D+t++ Wd   
   mKIAA0893   959    QGLHALsGHTGHILALYTWSG--WMIASGSQDKTVRFWD    995  

WD40: domain 5 of 7, from 1004 to 1041: score 24.6, E = 0.0023
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       + ++++g  s+V +va++p+ g+lla+g +D ++ ++d   
   mKIAA0893  1004    VVGTTFhGTGSAVASVAVDPS-GRLLATGQEDSSCMLYD    1041 

WD40: domain 6 of 7, from 1046 to 1083: score 34.5, E = 2.4e-06
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +++++ H+s V++v+fsp   ++l++gS D +ik+ d   
   mKIAA0893  1046    RMVQSYhPHSSDVRSVRFSPG-AHYLLTGSYDMKIKVTD    1083 

WD40: domain 7 of 7, from 1092 to 1129: score 24.7, E = 0.0021
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       +l v + H++ V  ++++      ++s+S+D+t+ +W    
   mKIAA0893  1092    LPLMVVgEHKDKVIQCRWHTQ-DLSFLSSSADRTVTLWT    1129 

//