hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj56010/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0891 ( 1362 res) mfj56010 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- UCH Ubiquitin carboxyl-terminal hydrolase 370.3 2e-107 1 zf-MYND MYND finger 39.9 5.7e-08 1 CS CS domain 3.4 0.009 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CS 1/1 362 462 .. 1 103 [] 3.4 0.009 zf-MYND 1/1 872 914 .. 1 43 [] 39.9 5.7e-08 UCH 1/1 575 1292 .. 1 273 [] 370.3 2e-107 Alignments of top-scoring domains: CS: domain 1 of 1, from 362 to 462: score 3.4, E = 0.009 *->skfRyDWyQT.eseVvItvYaKnvlpenvniefssnDRkt....... + ++ D y +++ +Vv+ vY K + + +++ f + D ++ +++++ mKIAA0891 362 AFVKNDSYEKgPDSVVVHVYVKEIRRDSSRVLFREQDFTLifqtrdg 408 ..LsVsiqVFkheFGneefqlqlkLwgeIipiHiLHvqEkssvkvlstvK + L+ + + +f+ q+kL+ I p E++++ +++ + mKIAA0891 409 nfLRLHP---GCG-PHTIFRWQVKLRNLIEP-------EQCTFCFTAS-R 446 VEItLkKaepisWesL<-* + I+L+K + +W L mKIAA0891 447 IDICLRKRQSQRWGGL 462 zf-MYND: domain 1 of 1, from 872 to 914: score 39.9, E = 5.7e-08 *->CanCgreatks.rqLkkCsrCknarYCSkeCQrkdWllgHkreC<-* Ca C r++ + +++Lk+C+rC+++ YC ++CQ+++W+ +Hk C mKIAA0891 872 CAACQRKQQSEeEKLKRCTRCYRVGYCNQFCQKTHWP-DHKGLC 914 UCH: domain 1 of 1, from 575 to 1292: score 370.3, E = 2e-107 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyeseinesnpl pg+tGLvNlGNTC+mNSv+Q+L+++++lrd++ s+e ein npl mKIAA0891 575 PGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPL 621 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvvpsplkflqfkttlgkineefsgym g g+l++ +a L++al++g+++ +ps+lk +++++++++f gy mKIAA0891 622 GTGGRLAIGFAVLLRALWKGtHQAFQPSKLK-----AIVASKASQFTGYA 666 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxx xxx xxxxxxx QqDAhEFllfLLdgLhedlnrvnkkpytepe.sdkrpd.kaa.eawknhs Q+DA+EF++fLLdgLhedlnr+ kpyte+ +sd+rpd+ +a+eaw++h+ mKIAA0891 667 QHDAQEFMAFLLDGLHEDLNRIQNKPYTETVdSDGRPDeVVAeEAWQRHK 716 RF xxxxxxxxxxxxxxxxx lrneslitdlFqGqles................................. rn+s+i+dlFqGq++s+ ++ + + + + ++ + + +++++ + mKIAA0891 717 MRNDSFIVDLFQGQYKSklvcpvcakvsitfdpflylpvplpqkqkvlpi 766 RF .................................................. +++++++ + + ++++++ ++ ++ +++ + ++++ + + + mKIAA0891 767 fyfarephskpikflvsvskenssasevldslsqsvhvkpenlrlaevik 816 RF .................................................. ++ ++ ++++ + ++++ + + +++ +++ + +++++ ++ mKIAA0891 817 nrfhrvflpshsldavsptdvllcfellspelakervvvlevqqrpqvps 866 RF .................................................. + +++ +++++++++++ ++++++ + + +++ +++++ +++++ +++ mKIAA0891 867 ipiskcaacqrkqqseeeklkrctrcyrvgycnqfcqkthwpdhkglcrp 916 RF .................................................. ++ + + + + ++ + + + ++ + + + +++ ++++ +++ mKIAA0891 917 enigypflvsvpasrltyarlaqllegyarysvsvfqppfqpgrmalesq 966 RF .................................................. ++++++ ++++ + +++++++ ++++ + ++ +++++ ++ ++ ++ mKIAA0891 967 spgcttllstssleagdserepiqpselqlvtpvaegdtgahrvwppadr 1016 RF .................................................. ++ +++++ +++ +++ ++++ +++ ++++ ++ ++++++ +++ mKIAA0891 1017 gpvpstsglssemlasgpiegcpllagervsrpeaavpgyqhssesvnth 1066 RF .................................................. +++ + + ++++++ +++++++ + +++++ +++++ ++ mKIAA0891 1067 tpqffiykidasnreqrledkgetplelgddcslalvwrnnerlqefvlv 1116 RF .................................................. +++ ++ +++++ ++ + ++ + +++ + ++++ +++ +++++ mKIAA0891 1117 askelecaedpgsageaaraghftldqclnlftrpevlapeeawycpqck 1166 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx .......rlkisrLPpiLiihLKRFkydgetgmnkKindkVefPleLdls ++++ +++l ++rLP +Li++LKRF++ + ++ Kind VefP ++++ mKIAA0891 1167 qhreaskQLLLWRLPNVLIVQLKRFSFRSF-IWRDKINDLVEFPVRNLDL 1215 RF xxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx syctae....pplkYeLyaVvvHsGsslsgGHYiayikk......kkknn s ++ ++++++ Y+LyaV++H+G ++ gGHY+a+++ ++++++ ++ mKIAA0891 1216 SKFCIGqkeeQLPSYDLYAVINHYG-GMIGGHYTACARLpndrssQRSDV 1264 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx kWykfDDekVsevseeevlersssAYiLFY<-* +W++fDD++V+ v+e++v +++ AY+LFY mKIAA0891 1265 GWRLFDDSTVTTVDESQV--VTRYAYVLFY 1292 //