hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06494/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0890  ( 1057 res)   mbg06494

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   110.5    1.9e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/1     457   646 ..     1   219 []   110.5  1.9e-28

Alignments of top-scoring domains:
DEXDc: domain 1 of 1, from 457 to 646: score 110.5, E = 1.9e-28
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                         +  p+   ++ ++ ++ +v++ ++TG+GKT+ +++ lle+   +
   mKIAA0890   457    PQlPVDPHRDTILSAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTE 503  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                   +     +g ++ v++++P+r+ a  +a++++ +++++        ++vg+
   mKIAA0890   504 G-----RGARCNVIITQPRRISAVSVAQRVSHELGPSL------RRNVGF 542  

                   ygGsktkekeqlrklksgkt....dilvtTpgrLldll.ngkglsl.nld
                     +           l+s+++ +++ +l++T g+Ll+ l++++  sl+ ++
   mKIAA0890   543 QVR-----------LESKPParggALLFCTVGILLRKLqSNP--SLeGVS 579  

                   lvilDEaHrlldmgsggdhgfgdqle.llkrl...pknrqrlllSATppe
                   +vi+DE+H+++         ++d l+ llk l++ +++++++l+SAT  +
   mKIAA0890   580 HVIVDEVHERD--------VNTDFLLiLLKGLqrlNPALRLVLMSATG-D 620  

                   ienllklflnlpelfpnpvfisvgftlepieqf<-*
                    e+++++f+        pv  ++gf   p++++   
   mKIAA0890   621 NERFSRYFGG------CPVIKVPGF-MYPVKEH    646  

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