hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj56082/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0886  ( 1245 res)   mfj56082

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
Reticulon Reticulon                                     367.3   1.6e-106   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Reticulon   1/1    1058  1243 ..     1   208 []   367.3 1.6e-106

Alignments of top-scoring domains:
Reticulon: domain 1 of 1, from 1058 to 1243: score 367.3, E = 1.6e-106
                   *->vaDvllWRdkkkSGiVLgsaTalwvLFeLaeYsLltvvshillllLa
                      v+D+l+WRd+kk+G+V+g++  l++L++L+ +s+++v+++i+l+lL+
   mKIAA0886  1058    VVDLLYWRDIKKTGVVFGAS--LFLLLSLTVFSIVSVTAYIALALLS 1102 

                   vTISlflwsnvaqainKsdptiPFkaYLdeevtlPeElvlkladslrvhv
                   vTIS+++++ v+qai+Ksd+++PF+aYL++ev+++eElv+k+++s+  hv
   mKIAA0886  1103 VTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHV 1152 

                   NrtlsiLrdlalvrDlvksLkvivgLWvltyvGawfNgLTLvyialvllF
                   N+t+++Lr+l+lv+Dlv+sLk++v++Wv+tyvGa+fNgLTL+++al++lF
   mKIAA0886  1153 NSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLF 1202 

                   TvPvlYEKyqdqIDhyvekarkelkkqYavlDekVEskkakIlsKiPGlr
                   ++Pv+YE++q+qIDhy+++a+k++k++           +akI++KiP   
   mKIAA0886  1203 SIPVIYERHQAQIDHYLGLANKSVKDA-----------MAKIQAKIP--- 1238 

                   slavrgslkkK<-*
                          lk+K   
   mKIAA0886  1239 ------GLKRK    1243 

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