hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh04149/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0885  ( 822 res)   mbh04149

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CSP      Cold shock protein domain                      341.0    7.8e-98   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CSP        1/5      82   145 ..     1    70 []    69.2  5.1e-16
CSP        2/5     211   272 ..     1    70 []    80.2  2.5e-19
CSP        3/5     374   437 ..     1    70 []    68.2  1.1e-15
CSP        4/5     544   606 ..     1    70 []    66.0  4.7e-15
CSP        5/5     699   762 ..     1    70 []    69.6  3.8e-16

Alignments of top-scoring domains:
CSP: domain 1 of 5, from 82 to 145: score 69.2, E = 5.1e-16
                   *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk
                      tG+++ +     +GFI+++++  ++ +F+h+s+++g +l  L+ GD 
   mKIAA0885    82    TGVIEKLL--TSYGFIQCSER--QARLFFHCSQYNG-NLQDLKVGDD 123  

                   VefdvvsyprggggpqAanvrkl<-*
                   Vef+v s +r++g+p A +++k+   
   mKIAA0885   124 VEFEVSS-DRRTGKPIAIKLVKI    145  

CSP: domain 2 of 5, from 211 to 272: score 80.2, E = 2.5e-19
                   *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk
                      +G+V++++  + FGFI++ d    k++F+h+s+++g +l++L+ GD 
   mKIAA0885   211    QGVVCAMK--EAFGFIERGDV--VKEIFFHYSEFKG-DLETLQPGDD 252  

                   VefdvvsyprggggpqAanvrkl<-*
                   Vef++ +   ++g++ A+ vr+l   
   mKIAA0885   253 VEFTIKD---RNGKEVATDVRLL    272  

CSP: domain 3 of 5, from 374 to 437: score 68.2, E = 1.1e-15
                   *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk
                      +G++ ++   +GFGFI + d+  ++ +F+h+s+I +   + L+  D+
   mKIAA0885   374    MGVIAAMR--DGFGFIKCVDR--DARMFFHFSEILD--GNQLHIADE 414  

                   VefdvvsyprggggpqAanvrkl<-*
                   Vef+vv+++  +++++A  ++kl   
   mKIAA0885   415 VEFTVVPDMLSAQRNHAIRIKKL    437  

CSP: domain 4 of 5, from 544 to 606: score 66.0, E = 4.7e-15
                   *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk
                       G+V +++  ++FGFI+++++  +k++F+h+s++ g +  sL+ GD 
   mKIAA0885   544    LGYVATLK--DNFGFIETANH--DKEIFFHYSEFSG-DVDSLELGDM 585  

                   VefdvvsyprggggpqAanvrkl<-*
                   Ve+++ +  ++g + +A++v k+   
   mKIAA0885   586 VEYSLSK--GKGNKVSAEKVNKA    606  

CSP: domain 5 of 5, from 699 to 762: score 69.6, E = 3.8e-16
                   *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk
                      + tV++ +  + FGFI  + g ++k +F+h  ++q+    +L+ GD+
   mKIAA0885   699    RATVECVK--DQFGFINYEVG-DSKKLFFHVKEVQD--GVELQAGDE 740  

                   VefdvvsyprggggpqAanvrkl<-*
                   Vef+v   ++++g+++A+nv+ +   
   mKIAA0885   741 VEFSVIL-NQRTGKCSACNVWRV    762  

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