hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbh/mbh04149/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0885 ( 822 res) mbh04149 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CSP Cold shock protein domain 341.0 7.8e-98 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CSP 1/5 82 145 .. 1 70 [] 69.2 5.1e-16 CSP 2/5 211 272 .. 1 70 [] 80.2 2.5e-19 CSP 3/5 374 437 .. 1 70 [] 68.2 1.1e-15 CSP 4/5 544 606 .. 1 70 [] 66.0 4.7e-15 CSP 5/5 699 762 .. 1 70 [] 69.6 3.8e-16 Alignments of top-scoring domains: CSP: domain 1 of 5, from 82 to 145: score 69.2, E = 5.1e-16 *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk tG+++ + +GFI+++++ ++ +F+h+s+++g +l L+ GD mKIAA0885 82 TGVIEKLL--TSYGFIQCSER--QARLFFHCSQYNG-NLQDLKVGDD 123 VefdvvsyprggggpqAanvrkl<-* Vef+v s +r++g+p A +++k+ mKIAA0885 124 VEFEVSS-DRRTGKPIAIKLVKI 145 CSP: domain 2 of 5, from 211 to 272: score 80.2, E = 2.5e-19 *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk +G+V++++ + FGFI++ d k++F+h+s+++g +l++L+ GD mKIAA0885 211 QGVVCAMK--EAFGFIERGDV--VKEIFFHYSEFKG-DLETLQPGDD 252 VefdvvsyprggggpqAanvrkl<-* Vef++ + ++g++ A+ vr+l mKIAA0885 253 VEFTIKD---RNGKEVATDVRLL 272 CSP: domain 3 of 5, from 374 to 437: score 68.2, E = 1.1e-15 *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk +G++ ++ +GFGFI + d+ ++ +F+h+s+I + + L+ D+ mKIAA0885 374 MGVIAAMR--DGFGFIKCVDR--DARMFFHFSEILD--GNQLHIADE 414 VefdvvsyprggggpqAanvrkl<-* Vef+vv+++ +++++A ++kl mKIAA0885 415 VEFTVVPDMLSAQRNHAIRIKKL 437 CSP: domain 4 of 5, from 544 to 606: score 66.0, E = 4.7e-15 *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk G+V +++ ++FGFI+++++ +k++F+h+s++ g + sL+ GD mKIAA0885 544 LGYVATLK--DNFGFIETANH--DKEIFFHYSEFSG-DVDSLELGDM 585 VefdvvsyprggggpqAanvrkl<-* Ve+++ + ++g + +A++v k+ mKIAA0885 586 VEYSLSK--GKGNKVSAEKVNKA 606 CSP: domain 5 of 5, from 699 to 762: score 69.6, E = 3.8e-16 *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk + tV++ + + FGFI + g ++k +F+h ++q+ +L+ GD+ mKIAA0885 699 RATVECVK--DQFGFINYEVG-DSKKLFFHVKEVQD--GVELQAGDE 740 VefdvvsyprggggpqAanvrkl<-* Vef+v ++++g+++A+nv+ + mKIAA0885 741 VEFSVIL-NQRTGKCSACNVWRV 762 //