hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh04149/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0885 ( 822 res) mbh04149 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CSD 'Cold-shock' DNA-binding domain 352.8 3.8e-102 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CSD 1/5 80 145 .. 1 71 [] 80.2 4.2e-20 CSD 2/5 209 272 .. 1 71 [] 91.7 1.5e-23 CSD 3/5 372 437 .. 1 71 [] 31.9 1.5e-05 CSD 4/5 542 606 .. 1 71 [] 77.9 2.1e-19 CSD 5/5 697 762 .. 1 71 [] 77.8 2.3e-19 Alignments of top-scoring domains: CSD: domain 1 of 5, from 80 to 145: score 80.2, E = 4.2e-20 *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgpkfrsLqeG ++tG+++ + + +GFI++++ ++ +F+H+S+++g+ + L+ G mKIAA0885 80 RETGVIEKLLT--SYGFIQCSERQARLFFHCSQYNGNL---QDLKVG 121 qkVeFeivedgGqkGpqAanVtkl<-* ++VeFe+++d+++++p A + +k+ mKIAA0885 122 DDVEFEVSSDRRTGKPIAIKLVKI 145 CSD: domain 2 of 5, from 209 to 272: score 91.7, E = 1.5e-23 *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgpkfrsLqeG +++G+V+ +++ FGFI++ d k++F+H+S+++gd ++Lq+G mKIAA0885 209 RCQGVVCAMKE--AFGFIERGDVVKEIFFHYSEFKGDL---ETLQPG 250 qkVeFeivedgGqkGpqAanVtkl<-* ++VeF i + ++++ A++V++l mKIAA0885 251 DDVEFTIKD--RNGKEVATDVRLL 272 CSD: domain 3 of 5, from 372 to 437: score 31.9, E = 1.5e-05 *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgpkfrsLqeG ++ G++ + + GFGFI + d ++ F+HfS+I ++ L mKIAA0885 372 REMGVIAAMRD--GFGFIKCVDRDARMFFHFSEILDGN----QLHIA 412 qkVeFeivedg.GqkGpqAanVtkl<-* ++VeF +v d ++ +++A + kl mKIAA0885 413 DEVEFTVVPDMlSAQRNHAIRIKKL 437 CSD: domain 4 of 5, from 542 to 606: score 77.9, E = 2.1e-19 *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgpkfrsLqeG + G+V ++++ FGFI+ ++++k++F+H+S+++gd+ sL+ G mKIAA0885 542 RLLGYVATLKD--NFGFIETANHDKEIFFHYSEFSGDV---DSLELG 583 qkVeFeivedgGqkGpqAanVtkl<-* ++Ve+++++ g+ ++ +A++V+k+ mKIAA0885 584 DMVEYSLSK-GKGNKVSAEKVNKA 606 CSD: domain 5 of 5, from 697 to 762: score 77.8, E = 2.3e-19 *->matGtVKWFNaeKGFGFItpedgsk.DVFVHfSaIqgdgpkfrsLqe ++ tV++ ++ +FGFI++e g+ + +F+H++++q ++ +Lq+ mKIAA0885 697 LRRATVECVKD--QFGFINYEVGDSkKLFFHVKEVQDGV----ELQA 737 GqkVeFeivedgGqkGpqAanVtkl<-* G++VeF++ ++++++++A+nV+ + mKIAA0885 738 GDEVEFSVILNQRTGKCSACNVWRV 762 //