hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj03243/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0882  ( 1229 res)   mfj03243

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable   202.6    3.5e-56   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1     477   690 ..     1   310 []   202.6  3.5e-56

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 477 to 690: score 202.6, E = 3.5e-56
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      v kG+p+s+Rge+W lL++a  ++                      +
   mKIAA0882   477    VLKGIPESMRGELWLLLSGAINEK----------------------A 501  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                   + +++Y++l ++  +k   ++                             
   mKIAA0882   502 THPGYYEDLVEKSMGKYNLAT----------------------------- 522  

                   dqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                     Ie+Dl+R +pe++ Fq+++               g+ +LrrvL+aY+ 
   mKIAA0882   523 EEIERDLHRSLPEHPAFQNEM---------------GIAALRRVLTAYAF 557  

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                   +np+  +gYcQ mn ++++LLl+     Ee+AFw++v+L+er+lp ++  
   mKIAA0882   558 RNPN--IGYCQAMNIVTSVLLLYA---KEEEAFWLLVALCERMLPDYY-- 600  

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl
                              g+  dq v++ l ++y P+Ly  +q++            
   mKIAA0882   601 ------NTRVVGALVDQGVFEELARDYVPQLYDCMQDL------------ 632  

                   eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala
                       s  +l+WfLtlF + +P+e ++ + D++f+e    g +++f+ ala
   mKIAA0882   633 -GVISTISLSWFLTLFLSVMPFESAVVVVDCFFYE----GIKVIFQLALA 677  

                   iLklnedkllkld<-*
                   +L+ n dkll +    
   mKIAA0882   678 VLDANVDKLLNCK    690  

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