hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj03243/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0882  ( 1229 res)   mfj03243

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      TBC domain                                     236.6    3.6e-67   1
GRAM     GRAM domain                                    189.2    6.6e-53   2
efhand   EF hand                                         20.8      0.033   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
GRAM       1/2     111   178 ..     1    82 []    94.6  1.9e-24
GRAM       2/2     258   326 ..     1    82 []    94.7  1.8e-24
TBC        1/1     477   689 ..     1   219 []   236.6  3.6e-67
efhand     1/1     855   883 ..     1    29 []    20.8    0.033

Alignments of top-scoring domains:
GRAM: domain 1 of 2, from 111 to 178: score 94.6, E = 1.9e-24
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                       kf+  F+  +p+eEkL+++     ysC ++++  ++p+qG++Yl+ 
   mKIAA0882   111    VKFHRLFG--MPEEEKLVNY-----YSCSYWKG--RVPRQGWMYLSI 148  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   n+lcF S+++g ++     klvi+++di+++ek+    
   mKIAA0882   149 NHLCFSSFLMGREA-----KLVIRWVDITQLEKNA    178  

GRAM: domain 2 of 2, from 258 to 326: score 94.7, E = 1.8e-24
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                      e++r+ F+  lp++EkL+++     ++C+l++pf+k++  G++++++
   mKIAA0882   258    ERYRALFR--LPKDEKLDGH-----TDCTLWTPFNKMHILGQMFVST 297  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   n++cF S k+ +l+     +l+iPl++++ vek +   
   mKIAA0882   298 NYICFTS-KEENLC-----SLIIPLREVTIVEKAD    326  

TBC: domain 1 of 1, from 477 to 689: score 236.6, E = 3.6e-67
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                      v  G p s+r++ W+++sgA   +   +g+Ye l+ +  +k   a +
   mKIAA0882   477    VLKGIPESMRGELWLLLSGAINEKATHPGYYEDLVEKSMGKYNLATE 523  

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                   +Ie+D+ R+L++  aFq +    gi  LrrvL+AY  +nP +gYcQ+MN+
   mKIAA0882   524 EIERDLHRSLPEHPAFQNE---MGIAALRRVLTAYAFRNPNIGYCQAMNI 570  

                   vaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLdsfv
                   v + +Ll    Ee+AF++L  L+e  +P  Yy     G + Dq v++   
   mKIAA0882   571 VTSVLLLYA-KEEEAFWLLVALCERMLPD-YYNTRVVGALVDQGVFEELA 618  

                   eellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLFadG
                    +  p+LY  +  +gv  + +sL wfL+L+   +P e A+ + D +F +G
   mKIAA0882   619 RDYVPQLYDCMQDLGV-ISTISLSWFLTLFLSVMPFESAVVVVDCFFYEG 667  

                   ivllfrvaLAvLkilkeqiLda<-*
                   i + f+ aLAvL  + + +L +   
   mKIAA0882   668 IKVIFQLALAVLDANVDKLLNC    689  

efhand: domain 1 of 1, from 855 to 883: score 20.8, E = 0.033
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       + ++F+++D +gD  I+f Ef+++l++    
   mKIAA0882   855    LASRLFQLLDENGDSLINFREFVSGLSAA    883  

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