hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm03231/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0881 ( 1070 res) mpm03231 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Pkinase Protein kinase domain 266.6 3.4e-76 1 Pkinase_Tyr Protein tyrosine kinase 94.8 1.7e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pkinase_Tyr 1/1 43 295 .. 1 272 [] 94.8 1.7e-24 Pkinase 1/1 43 296 .. 1 287 [] 266.6 3.4e-76 Alignments of top-scoring domains: Pkinase_Tyr: domain 1 of 1, from 43 to 295: score 94.8, E = 1.7e-24 *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLkeigasseei. ++ ++++G+G+FG Vy ++ + VA+K++ ++s ++ + mKIAA0881 43 FSDLREIGHGSFGAVYFARDV----RNSEVVAIKKM---SYSGKQSn 82 e.redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegG e+++d ++E++ + kl +HpN +++ G+ ++ + ++V+Ey+ +G mKIAA0881 83 EkWQDIIKEVRFLQKL-RHPNTIQYRGCYLR-EHT----AWLVMEYC-LG 125 dLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcL + d L h ++pL + + + +G++YL+s+n++HRD+ A N+L mKIAA0881 126 SASDLLEVH--KKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNIL 173 VsenlvVKIsDFGLaRdiynddyYvrkkgggk.lPvkWmAPEslkygk.. +se++ VK +DFG a + + ++ WmAPE++ + ++ mKIAA0881 174 LSEPGLVKLGDFGSASIM--------APANSFvGTPYWMAPEVILAMDeg 215 .FtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPe ++ k DVWS G+++ E+ ++P +m l +++++ + mKIAA0881 216 qYDGKVDVWSLGITCIELAE-RKPP-LFNMNAMSALYHIAQNESPALQSG 263 nCPdelYdlMlqCWaedPedRPtFsel.verL<-* + ++ + +C ++ P+dRPt + l +r+ mKIAA0881 264 HWSEYFRNFVDSCLQKIPQDRPTSEVLlKHRF 295 Pkinase: domain 1 of 1, from 43 to 296: score 266.6, E = 3.4e-76 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar + l+ +G GsfG Vy a+++ ++++VA+K++++++k++ +k++ + mKIAA0881 43 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSgKQSNEKWQDII 89 rrsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGL.rlldLfdyl + E++ l++L+HpN +++++++ ++ +lV+Eyc g ++ll+ + mKIAA0881 90 K--EVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSAsDLLEVH--- 134 setrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILlden k+pl +e e+ + l+gl+YLHs++ iHRD+K NILl+e mKIAA0881 135 -----KKPL--QEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEP 177 gvvdaflKiaDFGlAkklstsss.lttfvGTpwYmAPEvll..ggngygt g v K++DFG+A + ++++fvGTp++mAPEv+l + y+ mKIAA0881 178 GLV----KLGDFGSASIM----ApANSFVGTPYWMAPEVILamDEGQYDG 219 kvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspe kvDvWSlG++++el+ +kpP + + + l+ i+++ +p l + + mKIAA0881 220 KVDVWSLGITCIELAERKPPLFNM---NaMSALYHIAQNESPALQSGHW- 265 wdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* se ++ ++++cL+k P++R+t e +l+H ++ mKIAA0881 266 ---------------SEYFRNFVDSCLQKIPQDRPTSEVLLKHRFV 296 //