hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj02178/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0880  ( 642 res)   mtj02178

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
oat      oat: sodium-independent organic anion transp   574.2   8.1e-169   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
oat        1/1       1   623 [.     1   723 []   574.2 8.1e-169

Alignments of top-scoring domains:
oat: domain 1 of 1, from 1 to 623: score 574.2, E = 8.1e-169
                   *->mgelektiatqesstglkprprclqslfskikvfvLlltlaqlqgll
                                                      +fvL++ l+ql++l 
   mKIAA0880     1    --------------------------------FFVLCHSLLQLTQLM 15   

                   vnglvnsslttIErrFklstsssGlIngsyeiGnllLiIfvSYFGtklhr
                    +g+ +ss++t+E+rF+ls+ +sGl ++++e+Gn+ Li fvSYFG+++hr
   mKIAA0880    16 ISGYLKSSISTVEKRFGLSSQISGLLAAFNEVGNVSLILFVSYFGSRVHR 65   

                   PkvIGiGcvimglGslllsLPhFlsgrYeysttvsstgnlSsansflc..
                   P++IG G ++++   ll+ LPhF+s++Y y   +ss+ +   + + lc +
   mKIAA0880    66 PRMIGYGALLVATAGLLMALPHFISEPYRYD-HSSSDNRSLDFEASLClp 114  

                   .menstqaLrptqdpSecqkehketSlmwllvlvaqllrGIGetPifplG
                   + +    aL    ++S +  +h     m + ++ aq l+GIG +Pi+p+G
   mKIAA0880   115 tTMAPASALSNGSCSSHTETKHL---TMVGIMFAAQTLLGIGGVPIQPFG 161  

                   iSYiDdFaksknsPlYiGilesiaVfGPafGyLlgSfclqiyvDtgsvnt
                   iSYiDdFa ++nsPlYiGil+ i + GP ++y lgS +l++yvD+ + + 
   mKIAA0880   162 ISYIDDFAHHSNSPLYIGILFGITTMGPGLAYGLGSLMLRLYVDIDRMPE 211  

                   eqiLdviltptDPRWiGAWWlGFLicsgValltslPlffFPkaLpkegkr
                        ++ltp DPRW+GAWWlGFLi+sg+ +l+s P ffFP+ +pke  +
   mKIAA0880   212 G---GINLTPKDPRWVGAWWLGFLISSGLVVLASSPYFFFPREMPKEKHE 258  

                   knvdvheaekleksRtPeCCGmPGsnktaaLnsDaPmaDnfGsnkaikkf
                      +    + + ++      G   s +   L   a +a            
   mKIAA0880   259 FHFRRKVLASAAST---ASKGEDLSSQHEPLKKQAGLAQ----------- 294  

                   DYttfkmLnkifeiteqasLLYssiPaRGedksrkklsditKdFpkiikr
                                                 +++ +    ++K Fp+ ++r
   mKIAA0880   295 -----------------------------IAPDLTLV-QFVKVFPRVLLR 314  

                   llcNkiyMlviLaqvidvlafnGyitFLpKYLEkqyGissaeAnlLiGvv
                    l  +i+ lv+L+qv+ ++ ++G+ tFLpK+LE+q++i+++ An L G+ 
   mKIAA0880   315 NLRHPIFLLVVLSQVCTSSMVAGMATFLPKFLERQFSITASFANMLLGCL 364  

                   nlPaaglGyliGGiimKkFklnvkkaayfaillstlsylLysplflIgCe
                    +P  ++G + GG ++K++ l+  +   +  l s+l  l+ +plf+IgC+
   mKIAA0880   365 TIPLVIVGIMMGGVLVKRLHLSPVQCSALCLLGSLLCLLFSVPLFFIGCS 414  

                   sapvagvnnsYpstdqsiyvenetlakDPeLmndCnrqCsCdssffdPVC
                   +  +ag++       q+ +   +           C++ CsC s  f+PVC
   mKIAA0880   415 THQIAGITQ--DLGAQPGPSLFP----------GCSEPCSCQSDDFNPVC 452  

                   gdnGdGRqlaYlSPChAGCssieksvgtg...snmvytnCSCvqtpgnss
                   +       ++Y  PChAGC  +   v+ + ++s+  ytnCSCv   gn  
   mKIAA0880   453 DTSA---YVEYTTPCHAGC--TGRVVQEAlgkSQVFYTNCSCV--AGNGT 495  

                   akkglcdkgpeCateLlyfliLfiplSFiasitavPlymvlLRvVnseek
                   +  g+c     C+   l+f+ Lf+ ++ +asit+ P  m +LR V+ e k
   mKIAA0880   496 VPAGSCE--SACSRLVLPFIVLFSLGAGLASITHTPSFMLILRGVKKEDK 543  

                   SlaiGlqwlliRvlatIPaPilFGllIDvsClhWqstlccGarGaCrmYd
                    la+G+q++l Rvla+ P+P+  G  ID +C+hW   l cG+r  Cr+Yd
   mKIAA0880   544 TLAVGMQFMLLRVLAWMPSPVIHGSAIDTTCVHWA--LTCGRRAVCRYYD 591  

                   ndnLRniyLgLtialrgsgllllffililmkk<-*
                    d LRn++ gL+   +  +l+   ++l +++    
   mKIAA0880   592 HDLLRNRFIGLQFFFKSGSLVCFTLVLAILRQ    623  

//