hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mtj/mtj02178/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0880 ( 642 res) mtj02178 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- OATP Organic Anion Transporter Polypeptide (OATP) 870.7 4.7e-258 1 MFS_1 Major Facilitator Superfamily 38.5 1.5e-07 1 Kazal_2 Kazal-type serine protease inhibitor domain 10.0 0.97 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Kazal_2 1/1 436 489 .. 1 61 [] 10.0 0.97 MFS_1 1/1 2 571 .. 1 396 [] 38.5 1.5e-07 OATP 1/1 2 596 .. 1 591 [] 870.7 4.7e-258 Alignments of top-scoring domains: Kazal_2: domain 1 of 1, from 436 to 489: score 10.0, E = 0.97 *->eCseyrsqvrNGlaCpreegydPVCGsDGckTYsNeCalgcanCkag Cse++ +C+ + ++PVC++ ++Y+ +C++gc + mKIAA0880 436 GCSEPC-------SCQSDD-FNPVCDTSAYVEYTTPCHAGCTGRVVQ 474 fl.egelrlkydGeC<-* +++ ++ +++C mKIAA0880 475 EAlGKSQVFYTNCSC 489 MFS_1: domain 1 of 1, from 2 to 571: score 38.5, E = 1.5e-07 *->lflatflaglgrsllgpalp.ylasslee.sslgqtdtlspteigll + l++ l l+ +++++l + ++ + + ++g ls+ gll mKIAA0880 2 FVLCHSLLQLTQLMISGYLKsSIS---TVeKRFG----LSSQISGLL 41 lsafslgyalaqplaGrlsDrfGrrvyirlkpvlllglllfalgslllaf ++ +g + + +++++++ r+ r r ++ g+ll a + ll+a+ mKIAA0880 42 AAFNEVGNVSLILFVSYFGSRVHRP---R---MIGYGALLVATAGLLMAL 85 assts............................................. +++s++ + +++++++++ + + + +++ + + ++++ +++++++ mKIAA0880 86 PHFISepyrydhsssdnrsldfeaslclpttmapasalsngscsshtetk 135 ....lwlllilrallqGlgggllapaaaaliadwfppeergralgivsag + + + ++++ l +G+gg + p ++++i d++ ++ ++++gi+++ mKIAA0880 136 hltmVGIMFAAQTL-LGIGGVPIQPFGISYIDDFAHHSNSPLYIGILFGI 184 fglGaalggpllggllaalgwwgss.............gt.fWraaFlil +++G+ l+ l++ +l + + ++++ + +++++++++ W Fli+ mKIAA0880 185 TTMGPGLAYGLGSLMLRLYVDIDRMpegginltpkdprWVgAWWLGFLIS 234 gilallaallllvlfllpeppakksakpeeeeali............... ++l +la + +f+++e+p++k++ ++ l++ ++ +++++ +++ mKIAA0880 235 SGLVVLASSP--YFFFPREMPKEKHEFHFRRKVLAsaastaskgedlssq 282 ......................plr.lll.p.lllillalflllaaflal ++ +++ + + ++ + + + + ++ l+ +++l+++l + mKIAA0880 283 heplkkqaglaqiapdltlvqfVKVfPRVlLrNLRHPIFLLVVLSQVCTS 332 ltflplylllpllls.saglslsalaagllllalglggllgglllggrls ++ +++ ++lp +l++++ +++s++ ++l +l + +++g++ gg+l+ mKIAA0880 333 SMVAGMATFLPKFLErQFSITASFANMLLG--CLTIPLVIVGIMMGGVLV 380 drlgrglarkgeaeaerrrllllgllllalgllllafapsls........ +rl+ + + l llg+ll +l+ + l+f++ ++++ + ++ mKIAA0880 381 KRLHLSPVQ-------CSALCLLGSLLCLLFSVPLFFIGCSThqiagitq 423 .................................................. + + +++++ ++ +++ + ++++ ++ +++ + +++ + + +++ mKIAA0880 424 dlgaqpgpslfpgcsepcscqsddfnpvcdtsayveyttpchagctgrvv 473 ...................................alllvallllGlgfg ++ ++++ ++ + ++++ + ++ ++ ++ +l +++l+ lG+g + mKIAA0880 474 qealgksqvfytncscvagngtvpagscesacsrlVLPFIVLFSLGAGLA 523 gv.fpalnalasdlappeaqerGtasGlyn.tagslggalgpllgGllld +++++++ l+ + + +e a G+ + +++ l+++ +p++ G +d mKIAA0880 524 SItHTPSFMLILRGVKKE--DKTLAVGMQFmLLRVLAWMPSPVIHGSAID 571 <-* mKIAA0880 - - OATP: domain 1 of 1, from 2 to 596: score 870.7, E = 4.7e-258 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ikvFllllglaallQGllvngyfkSsITTIEkRFkisSsqsGlIass F+l+++l++l Q l+++gy+kSsI+T+EkRF++sS++sGl+a++ mKIAA0880 2 ---FVLCHSLLQLTQ-LMISGYLKSSISTVEKRFGLSSQISGLLAAF 44 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ydIGnllliifVSYFGsrgHRPRwIGiGlllmalGslltaLPHFlyGpGe +++Gn+ li+fVSYFGsr+HRPR+IG+G ll+a+++ll+aLPHF+++p mKIAA0880 45 NEVGNVSLILFVSYFGSRVHRPRMIGYGALLVATAGLLMALPHFISEP-- 92 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx dalsLteefYsyestnltasnessnstlcilggiqthssaeiaspeqseg Y+y+ ++ ++ + +++++lc ++t+ ++++a +++s++ mKIAA0880 93 ---------YRYDHSSSDNRSLDFEASLC----LPTTMAPASALSNGSCS 129 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx adhkegtslmwlllfvaQllrGIGaTPiytlGiSYiDDnvkskkSPlYLg + +++ + +m++++f aQ+l+GIG++Pi+++GiSYiDD++++++SPlY+g mKIAA0880 130 SHTETKHLTMVGIMFAAQTLLGIGGVPIQPFGISYIDDFAHHSNSPLYIG 179 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ilftlamfGPAiGFllgSfcLrlYvDfgrvptedvsitptDPRWvGAWWL ilf ++++GP +++ lgS++LrlYvD++r+p++++++tp+DPRWvGAWWL mKIAA0880 180 ILFGITTMGPGLAYGLGSLMLRLYVDIDRMPEGGINLTPKDPRWVGAWWL 229 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GFLvcggllllsaiPfffFPKeLPkaskRrleeeqgrkesrdlearkakd GFL+++gl++l++ P+ffFP+e+Pk+ k + +++++++s++++a k++d mKIAA0880 230 GFLISSGLVVLASSPYFFFPREMPKE-KHEFHFRRKVLASAASTASKGED 278 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ekrkqaeepksgkidargrialwykaprflkdFpkvlkrlltNpvfmlvv ++++++++k+ + + +ia+ +++++f+k+Fp+vl+r l++p+f+lvv mKIAA0880 279 LSSQHEPLKKQAG---LAQIAPDLTLVQFVKVFPRVLLRNLRHPIFLLVV 325 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx laqvlessviaGystFlPKyLEtQyglsaSkAnlLtGvvalPaaavGill l+qv+ ss++aG++tFlPK+LE+Q++++aS An+L+G++++P ++vGi+ mKIAA0880 326 LSQVCTSSMVAGMATFLPKFLERQFSITASFANMLLGCLTIPLVIVGIMM 375 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GGliikkfklsargmakfaivvilvslagylplffigCssspvaGvtvsy GG+++k+++ls++++ +++++ +l++l++++plffigCs++++aG+t mKIAA0880 376 GGVLVKRLHLSPVQCSALCLLGSLLCLLFSVPLFFIGCSTHQIAGITQDL 425 RF xxxxxxxxxxxxxxxxxxx egnstsdshhleplssCna............................... + +++++ C++++++ +++ ++ ++++ + +++++ ++++ mKIAA0880 426 -----GAQPGPSLFPGCSEpcscqsddfnpvcdtsayveyttpchagctg 470 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ...................ipsnsassativkiklasdvlndkGyCpsdp + + +++ ++++++ +n++ +G+C+s mKIAA0880 471 rvvqealgksqvfytncscVAGNGTVP---------------AGSCESA- 504 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx kCckqfliFLilmcilsFigalsaipllmlvLRcVppeeKslAlGvqsll C++ +l+F++l++++ +++++++p++ml+LR V++e+K+lA+G q++l mKIAA0880 505 -CSRLVLPFIVLFSLGAGLASITHTPSFMLILRGVKKEDKTLAVGMQFML 553 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx iRlLGfIPaPIiFGalIDstCLvWgktCcGkrGaCrlYDndslr<-* +R+L+++P+P+i+G ID+tC++W tC G+r++Cr+YD d+lr mKIAA0880 554 LRVLAWMPSPVIHGSAIDTTCVHWALTC-GRRAVCRYYDHDLLR 596 //