hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic18036/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0879  ( 450 res)   mic18036

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Phosphodiest Type I phosphodiesterase / nucleotide py   328.2    9.5e-95   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Phosphodiest   1/1      56   336 ..     1   460 []   328.2  9.5e-95

Alignments of top-scoring domains:
Phosphodiest: domain 1 of 1, from 56 to 336: score 328.2, E = 9.5e-95
                   *->pkllvislDGfradyldrlyhagltPnlsaLlaeeGvsapytltpvf
                      p+ll++s+DGfradyl+     +++P+l+++ ++eGv +++ +++vf
   mKIAA0879    56    PRLLLVSFDGFRADYLKS----YDLPHLQNF-IKEGVLVEH-VKNVF 96   

                   PtlTfPnhytlvTGlyPesHGIvgNtfyDpktgavvyffeltdseavld.
                    t+TfPnhy++vTGly esHGIv+N++yD +t++         +++++d+
   mKIAA0879    97 ITKTFPNHYSIVTGLYEESHGIVANSMYDSVTKKH--------FSESNDk 138  

                   .pknWWdtttdglslkdnggepiwvtaqkqGgaiaaagvk.aaaffWPgs
                   +p  WW           ng+epiwvt q q         +++aa +WPg+
   mKIAA0879   139 dPF-WW-----------NGAEPIWVTNQLQE-------NRsSAAAMWPGT 169  

                   evaiidstyyrpqypqwvapgyrrPdireelaysgrpyngdvpvlagspl
                   +v i+                                             
   mKIAA0879   170 DVPIH--------------------------------------------- 174  

                   dlpleervdtilkarfqpldlaslewlalsaklpgtderPdllllYl.ee
                                                           + ++ Y+  e
   mKIAA0879   175 ----------------------------------------NITASYFmNE 184  

                   pDsaGHkyGP.dnspeavldalrrvDraigrLieaLkerglledtnlivv
                   pD +GHkyGP+d  +  ++  l++vD++ig+++  Lk  gl++++n+i++
   mKIAA0879   185 PDVSGHKYGPeD-KEN-MRRVLKEVDDLIGDIVLKLKVLGLWDSLNVIIT 232  

                   SDHGmapvkspdkviflndpaylpdkgllalkeedledadsasiksdafa
                   SDHGma++ s++++i+l++  +++  ++                      
   mKIAA0879   233 SDHGMAQC-SKNRLIDLDS--CIDRSNYSV-------------------- 259  

                   vsegpvariypnkpgeleevyearqavdelLsklpgvaevskliallegd
                   ++  pva+i p  + + +evy++                      l++++
   mKIAA0879   260 IDLTPVAAILP--KINVTEVYDK----------------------LKRCN 285  

                   phvkvylkedlpkrlhyaknerypRigdlvlvadpGwyitadyywldekk
                   ph++vylke++p+r++y+++   +Ri +++lva++Gw+it      + + 
   mKIAA0879   286 PHMNVYLKEAIPNRFYYQHS---SRIQPIILVAEEGWTITL----NKSSF 328  

                   apdfaktvdypgGtHGyd<-*
                             ++G+HGyd   
   mKIAA0879   329 ----------KLGDHGYD    336  

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