hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm04342/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0878  ( 633 res)   mpm04342

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        72.4    5.6e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1     442   540 ..     1   114 []    72.4  5.6e-17

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 442 to 540: score 72.4, E = 5.6e-17
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                       Dv++ ++g           ++a  H+a+L a+   +++  a+f+++
   mKIAA0878   442    ADVVFEIQG---------ATVPA--HRAILVAR---CEVMAAMFNGn 474  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                     + ++  i++ +      vs e+F  +L++lYt++ ++      +++ l
   mKIAA0878   475 ymeaksvlIPVYG------VSKETFLSFLEYLYTdSCCPAGI--FQAMCL 516  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L +A+++    q+ +l++ Ce f++++l   
   mKIAA0878   517 LICAEMY----QVSrLQHICELFIITQL    540  

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