hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm04342/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0878  ( 633 res)   mpm04342

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      BTB/POZ domain                                  81.4    1.9e-20   1
Ras      Ras family                                     -96.4       0.31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ras        1/1      62   218 ..     1   174 []   -96.4     0.31
BTB        1/1     436   540 ..     1   135 []    81.4  1.9e-20

Alignments of top-scoring domains:
Ras: domain 1 of 1, from 62 to 218: score -96.4, E = 0.31
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvD..........Fy
                                  SsLl+            +T+ + +  ++ + + F 
   mKIAA0878    62    ------------SSLLL---------NAASTV-ARpvfteyqasaFG 86   

                   tktvevdgktvkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSF
                      ++v++ +v  +I D     +  + r +   gA+ +++ Y ++++ SF
   mKIAA0878    87 NVKLVVHDCPVW-DIFD----SDWYTSRNL-IGGADIIVIKYNVNDKFSF 130  

                   envk.kWleeilrhadkdenvpivL..VGNKcDLeddedlelekq.....
                   ++vk+++++ i+r  +   +vp+++  VG+    ++       +++ + +
   mKIAA0878   131 HEVKdNYIPVIKRASN---SVPVIIaaVGT----RQ-------NEelpct 166  

                   ........kRqVsteeGealAkelgAlpFmETSAKtneNVeeaFeelare
                    +  ++++  +V+t eG +lAkelg + ++E   ++   + + F  +++ 
   mKIAA0878   167 cplctsdrGSCVTTTEGIQLAKELG-ATYLELHSLDDFYIGKYFGGVLEY 215  

                   ilk<-*
                    +    
   mKIAA0878   216 FMI    218  

BTB: domain 1 of 1, from 436 to 540: score 81.4, E = 1.9e-20
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln+ ++     DV++ ++        g +++AH+a+L a+ ++  a+
   mKIAA0878   436    LNKPMLA----DVVFEIQ--------GATVPAHRAILVARCEVMAAM 470  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F+g+     ++e +sv   i+  +vs e+f  +Le++Yt+          
   mKIAA0878   471 FNGN-----YMEAKSVL--IPVYGVSKETFLSFLEYLYTD---------- 503  

                   Pssc.kseenvedlLalAadllqipslvdkCeefliksl<-*
                    s+c++    ++ lL +A +++q+ +l+++Ce f+i++l   
   mKIAA0878   504 -SCCpAGIFQAMCLLICA-EMYQVSRLQHICELFIITQL    540  

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