hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00855/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0876  ( 1027 res)   mpg00855

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjN     Small domain found in the jumonji family of     71.1    1.4e-16   1
TUDOR    Tudor domain                                    56.8    2.7e-12   1
PHD      PHD zinc finger                                 56.5    3.4e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjN       1/1      20    62 ..     1    45 []    71.1  1.4e-16
PHD        1/2     718   776 ..     1    39 []    32.9  4.5e-05
PHD        2/2     838   894 ..     1    39 []    31.4  0.00012
TUDOR      1/1     904   960 ..     1    60 []    56.8  2.7e-12

Alignments of top-scoring domains:
JmjN: domain 1 of 1, from 20 to 62: score 71.1, E = 1.4e-16
                   *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<-
                       i++f+Pt+ EF+D+ +Y+++I++ +G A+++G +K++PPk+WkP  
   mKIAA0876    20    KIMTFRPTMDEFRDFNRYVAYIES-QG-AHRAGLAKIIPPKEWKP   62   

                   *
                    
   mKIAA0876     -   -    

PHD: domain 1 of 2, from 718 to 776: score 32.9, E = 4.5e-05
                   *->yCvCgk..................g.llqCdkgCdrwyHv.Clgppl
                      +C+  +++++++ + ++  +++++++l++C  +C+  +H +C+g  +
   mKIAA0876   718    MCFTSSgenteplpansyvgedgtSpLISCA-HCCLQVHAsCYGVRP 763  

                   eepdg.wyCprCk<-*
                   e+ +++w C+rC    
   mKIAA0876   764 ELAKEgWTCSRCA    776  

PHD: domain 2 of 2, from 838 to 894: score 31.4, E = 0.00012
                   *->yC.vCgk......g.llqCd.kgCdrwyHv.Clgpple.......ep
                       C  C+k+ ++ +g ++qC+ ++C++++Hv+C++ ++   ++++ + 
   mKIAA0876   838    KCiYCRKrmkrvsGaCIQCSyEHCSTSFHVtCAHAAGVlmepddwPY 884  

                   dg.wyCprCk<-*
                     +  C +++   
   mKIAA0876   885 VVsITCLKHR    894  

TUDOR: domain 1 of 1, from 904 to 960: score 56.8, E = 2.7e-12
                   *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv
                       +  +G++v+++ + +g++Yr+r+i+ + + ++yeV+f+D G++ +v
   mKIAA0876   904    RTVSLGQIVITKNR-NGLYYRCRVIGTTAQ-TFYEVNFED-GSQLTV 947  

                   plsdlrqlpekfa<-*
                   +++d+ +l+e+++   
   mKIAA0876   948 KRGDIFTLEEELP    960  

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