hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00855/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0876  ( 1027 res)   mpg00855

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjC     JmjC domain                                    216.0    5.7e-61   1
JmjN     jmjN domain                                     98.3    1.5e-25   1
PHD      PHD-finger                                      11.3      0.025   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjN       1/1      20    67 ..     1    55 []    98.3  1.5e-25
JmjC       1/1     182   298 ..     1   126 []   216.0  5.7e-61
PHD        1/1     737   778 ..     1    51 []    11.3    0.025

Alignments of top-scoring domains:
JmjN: domain 1 of 1, from 20 to 67: score 98.3, E = 1.5e-25
                   *->eiPvFyPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLE
                      +i++F+Ptm EF+D+++Y+a+I +++gA+++G++K++PPkeW     
   mKIAA0876    20    KIMTFRPTMDEFRDFNRYVAYI-ESQGAHRAGLAKIIPPKEW----- 60   

                   GkPpcald<-*
                    kP++++d   
   mKIAA0876    61 -KPRQTYD    67   

JmjC: domain 1 of 1, from 182 to 298: score 216.0, E = 5.7e-61
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkvWYaiPpeyaekfek
                      +ly+Gm+++t++wH+ed++lySinylhfg+pk WYaiPpe++ ++e 
   mKIAA0876   182    YLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE- 227  

                   lhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfvQ
                     +++  +  +p++ ++++ ++ lrh++tlisP++  L++ Gip+ r++Q
   mKIAA0876   228 --RLAIGF--FPGS-SQGCDAF-LRHKMTLISPII--LKKYGIPFSRITQ 269  

                   kpGEfVftfPgayHqvfNlGfniaeavNF<-*
                   ++GEf++tfP++yH++fN+Gfn+ae++NF   
   mKIAA0876   270 EAGEFMITFPYGYHAGFNHGFNCAESTNF    298  

PHD: domain 1 of 1, from 737 to 778: score 11.3, E = 0.025
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
                            ++d+     l+ C +C+  +H++C+g   e   +++W+C +
   mKIAA0876   737    ------GEDG--TSPLISCAHCCLQVHASCYGVRPE-LAKEGWTCSR 774  

                   Ctpk<-*
                   C ++   
   mKIAA0876   775 CAAH    778  

//