hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00520/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0875  ( 625 res)   mbg00520

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
yccV     yccV: hemimethylated DNA binding domain        194.3    1.9e-54   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
yccV       1/1     498   595 ..     1   103 []   194.3  1.9e-54

Alignments of top-scoring domains:
yccV: domain 1 of 1, from 498 to 595: score 194.3, E = 1.9e-54
                   *->aakFriGqvvRHklfgyrGVVidvDPeyanteewleaipveirprGk
                      +++++iG+v++Hk++gy++V++++DP++++++ew+++++v+++p+G+
   mKIAA0875   498    DVCYSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGH 544  

                   dQPFYhVLvEddegeplyvaYvaEeNLlsdesdepiehPqvdelFdkfde
                   +QPFY+VLvEd++++     Y+a+eNL++++++++i+hP+v+++F++f++
   mKIAA0875   545 HQPFYNVLVEDGSCR-----YAAQENLEYNVEPQEISHPDVGRYFSEFTG 589  

                   glykpk<-*
                   ++y+p+   
   mKIAA0875   590 THYIPN    595  

//