hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00520/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0875  ( 625 res)   mbg00520

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
F-box    F-box domain                                    17.0       0.45   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
F-box      1/1      35    82 ..     1    44 []    17.0     0.45

Alignments of top-scoring domains:
F-box: domain 1 of 1, from 35 to 82: score 17.0, E = 0.45
                   *->lldLPdellleIlsrLdpkd..llrlslVSkrwrslvdsl.lwf.kl
                      l +LP e+l+ Il+  ++   ++ r+s++++r+r++++s +  ++  
   mKIAA0875    35    LVQLPGEVLEYILCSGSLTAldIGRVSSTCRRLREVCQSSgQVWkEQ 81   

                   l<-*
                       
   mKIAA0875    82 F    82   

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