hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00394/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0872  ( 551 res)   mfj00394

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF254   SAND protein                                   904.8   2.6e-268   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF254     1/1     103   531 ..     1   502 []   904.8 2.6e-268

Alignments of top-scoring domains:
DUF254: domain 1 of 1, from 103 to 531: score 904.8, E = 2.6e-268
                   *->dkiseawrlqkKhvFILSEAGKPIysryDGseealsStvGviqAlVS
                      d+++e+wr+q+KhvF+LSEAGKPIysry Gs+eals+t+Gv++AlVS
   mKIAA0872   103    DPSDEDWRSQRKHVFVLSEAGKPIYSRY-GSVEALSATMGVMTALVS 148  

                   fvqsdgPSEdairSihadgnkivFLqKSPLiLVavSrttesSaaeLlqeL
                   fvqs+g   dair+i+a+++k+vFLq++PL+LVavSrt++s aa+L++eL
   mKIAA0872   149 FVQSAG---DAIRAIYAEDHKLVFLQQGPLLLVAVSRTPQS-AAQLRGEL 194  

                   ellYeQIlSiLTesqLeriFqkkGqNyDLRRLLsGsErlldnllasDsss
                   +++++QI+S+LT+++++riF++k qNyDLRRLL+GsEr+ld+ll      
   mKIAA0872   195 LAVHAQIVSTLTRASVARIFAHK-QNYDLRRLLAGSERTLDRLL------ 237  

                   dslnrdpldLLlnairclPLnsSvRdqLssllqsqLEKRqdakakgLlFs
                   ds+++dp++LLl+a+rc+PL++++Rd+L++ll++       ++a+gL++s
   mKIAA0872   238 DSVEQDPGALLLGAVRCVPLARPLRDALGTLLRR-------CTAPGLALS 280  

                   iliArqnrLvalVRaKkylaeCrLHpaDLhLlfnLvssqtsslfesgEnW
                   +l+++ +rL+++++++++laeCrL+paDL+Ll+++v++   ++f++gE+W
   mKIAA0872   281 VLAVG-GRLITVAQERNVLAECRLDPADLQLLLDWVGA---PAFAAGEAW 326  

                   vPICLPkFNpdGFfYAYisyPLcnDkesdidvCLlLlStdRdaFFalksv
                   +P+CLP+FNpdGFfYAY+++ L++     ++vCLlLl+t R+aF+a++++
   mKIAA0872   327 APVCLPRFNPDGFFYAYVAR-LDS-----MPVCLLLLGTNREAFHAMAAC 370  

                   kqkvvekLeknrgaleaLaealktsFN......pkysvsqvGsniPeLrH
                   ++ v++++++ +gal+ L+ea+++s N++  + p+ysv++vG  +P+LrH
   mKIAA0872   371 RRLVEDGMHN-LGALRTLGEAANFS-NgpaasaPAYSVQAVG--APGLRH 416  

                   FLYKsLDiPDhhKsskQftsPeleapykseeEreqileyElRLsalYqsL
                   FLYK+LDiP+ h++++QftsPeleapy++eeEr+       RLs+lY++L
   mKIAA0872   417 FLYKPLDIPEQHRQLPQFTSPELEAPYSREEERQ-------RLSDLYHRL 459  

                   HsrlhhDNGNLksRpLklfyrvgekenEDLAmDEtqmDFSELDEYiiGNS
                   H+rlh+     +sRpL+l+y+v+eke+                       
   mKIAA0872   460 HARLHS-----TSRPLRLIYHVAEKET----------------------- 481  

                   SFKqESVNmVLlAWVTgtFeLYlIfnNPlVtkalaikvVnKLlkWirKEE
                             LlAWVT++FeLY++++ PlVtka+ai vV+KLl+W+rKEE
   mKIAA0872   482 ----------LLAWVTSKFELYTCLS-PLVTKAGAILVVTKLLRWVRKEE 520  

                   dRLFIrnpltF<-*
                   dRLFIr+p+++   
   mKIAA0872   521 DRLFIRYPPKY    531  

//