hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00987/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0871  ( 471 res)   mbh00987

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RUN      RUN domain                                     165.7    7.7e-46   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RUN        1/1     105   229 ..     1   174 []   165.7  7.7e-46

Alignments of top-scoring domains:
RUN: domain 1 of 1, from 105 to 229: score 165.7, E = 7.7e-46
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +++ ++e++l+HGLk                         a+ ++l 
   mKIAA0871   105    QFFVVMEHCLKHGLK-------------------------AKKTFLG 126  

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   +       ++s+      ++p+++v +++++  +i+ ++++L+      +
   mKIAA0871   127 Q-------NKSF------WGPLELVEKLVPEAAEITASVKDLPG-----L 158  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   kt+vgrgR  AW+RlaL++k+Ls+y+k L++++ell+++Y+ nAl+++  
   mKIAA0871   159 KTPVGRGR--AWLRLALMQKKLSEYMKALINKKELLSEFYEVNALMME-- 204  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    eeg  i+++lL+gL+++d ++++k+e   
   mKIAA0871   205 -EEG-AIIAGLLVGLNVIDANFCMKGE    229  

//