hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mth/mth00251/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0870 ( 1280 res) mth00251 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD40 repeats 46.0 4.9e-09 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/3 1021 1060 .. 1 46 [] 5.6 63 WD40 2/3 1063 1104 .. 1 46 [] 32.5 5.8e-05 WD40 3/3 1238 1278 .. 1 46 [] 8.9 19 Alignments of top-scoring domains: WD40: domain 1 of 3, from 1021 to 1060: score 5.6, E = 63 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl ++++ + + + ++ V+++ + n++ +gs+D+ i++ mKIAA0870 1021 SwTVHQHCFkVGSS--KVNCMVMAEH-------NQVWVGSeDSVIYI 1058 Wd<-* + mKIAA0870 1059 IN 1060 WD40: domain 2 of 3, from 1063 to 1104: score 32.5, E = 5.8e-05 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + ++ + l+ H++ pVt++a++ +p+ ++s+s Dgt+ W mKIAA0870 1063 SmSCNKQLTDHRS--PVTGLAVHNGK----KPSEIYSCSlDGTVIAW 1103 d<-* + mKIAA0870 1104 N 1104 WD40: domain 3 of 3, from 1238 to 1278: score 8.9, E = 19 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt..ir + ++ ++l +H + V++++ d ++++sg + ++i mKIAA0870 1238 KvTVEKELVAHLD--TVRTLCSAED-------RYVLSGAgQEEgkIA 1275 lWd<-* +W+ mKIAA0870 1276 IWK 1278 //