hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mth/mth00251/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0870  ( 1280 res)   mth00251

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DENN     DENN (AEX-3) domain                            103.9    3.1e-27   1
dDENN    dDENN domain                                    74.1    2.9e-18   1
WD40     WD domain, G-beta repeat                        39.5    7.5e-08   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DENN       1/1     193   379 ..     1   231 []   103.9  3.1e-27
dDENN      1/1     442   505 ..     1    81 []    74.1  2.9e-18
WD40       1/3    1024  1060 ..     1    38 []     7.5       24
WD40       2/3    1065  1104 ..     1    38 []    27.8  0.00026
WD40       3/3    1240  1278 ..     1    38 []     4.9       51

Alignments of top-scoring domains:
DENN: domain 1 of 1, from 193 to 379: score 103.9, E = 3.1e-27
                   *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk
                      +vp + C++Sr+p+ ++ + +L  l + l  + + +           
   mKIAA0870   193    FVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFE----------- 228  

                   srdtvwrvltgvlevLhdirElEslirnL...lyeVplPapGktirvkvv
                                        + ++i+ +  +l+ +p P+pG     +++
   mKIAA0870   229 ---------------------VDNHIKDFaarLSLIPSPPPGPL--HLIF 255  

                   vlssgvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaa
                   ++ +          ++fp+  ++++p++d dl++++ +  +e vlq++++
   mKIAA0870   256 NMKPL--------QVVFPSRADPESPIVDLDLHLPLLCFRPEKVLQILTC 297  

                   aLlErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEd
                   +L+E++i+f Ss+   L+  ++++va L Pl+Wqh+++P+L  ++l   d
   mKIAA0870   298 ILTEQRIVFFSSDWALLTLMAECFVAYLHPLQWQHTFVPILSGQML---D 344  

                   vLcAPtPFlIGVhssffelvkdlpleidvvvVDLDtn<-*
                   +++APt Fl+G h   fe+v++ ++   +v+ D+D +   
   mKIAA0870   345 FVMAPTSFLMGCHLDHFEEVRKEAD--GLVLIDIDHG    379  

dDENN: domain 1 of 1, from 442 to 505: score 74.1, E = 2.9e-18
                   *->lddqvreaFLrfFNasllggYrnfLryprkapewegardevvtFqke
                      l+++++ + L+++ + +++  +n+L+y            e+++F+ e
   mKIAA0870   442    LNCKIQHITLQLL-VGIFREVKNHLNY------------EHRVFNSE 475  

                   aFLksrprssqraFlsrlletQAVemFaeFIeeR<-*
                   +FLk+r+ ++q +F++++l+t+   mF++F+++R   
   mKIAA0870   476 EFLKTRAAGDQ-QFYKQVLDTY---MFHSFLKAR    505  

WD40: domain 1 of 3, from 1024 to 1060: score 7.5, E = 24
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ ++  +s V+c+  + +  +++  gS+D  i+i +   
   mKIAA0870  1024    VHQHCFkVGSSKVNCMVMAEH--NQVWVGSEDSVIYIIN    1060 

WD40: domain 2 of 3, from 1065 to 1104: score 27.8, E = 0.00026
                   *->eclavl.gHtspVtcvafspd.sgpllasgSrDgtikiWd<-*
                       c + l++H spVt +a++  + ++ + s+S Dgt+  W+   
   mKIAA0870  1065    SCNKQLtDHRSPVTGLAVHNGkKPSEIYSCSLDGTVIAWN    1104 

WD40: domain 3 of 3, from 1240 to 1278: score 4.9, E = 51
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ ++l +H ++V+ ++ + d + l   g + g+i iW+   
   mKIAA0870  1240    TVEKELvAHLDTVRTLCSAEDRYVLSGAGQEEGKIAIWK    1278 

//