hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg15527/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0868 ( 1399 res) mbg15527 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LamG Laminin G domain 464.9 3.9e-135 4 FA58C Coagulation factor 5/8 C-terminal domain, di 88.7 6.9e-22 1 4.1m putative band 4.1 homologues' binding motif 38.8 7.2e-07 1 EGF Epidermal growth factor-like domain. 25.1 0.0097 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- FA58C 1/1 101 248 .. 1 199 [] 88.7 6.9e-22 LamG 1/4 275 412 .. 1 137 [] 128.1 9.6e-34 LamG 2/4 460 596 .. 1 137 [] 108.9 5.8e-28 EGF 1/2 624 658 .. 1 32 [] 22.3 0.066 LamG 3/4 886 1012 .. 1 137 [] 131.3 1e-34 EGF 2/2 1033 1069 .. 1 32 [] 10.8 28 LamG 4/4 1115 1255 .. 1 137 [] 108.8 6.4e-28 4.1m 1/1 1350 1368 .. 1 19 [] 38.8 7.2e-07 Alignments of top-scoring domains: FA58C: domain 1 of 1, from 101 to 248: score 88.7, E = 6.9e-22 *->eCneplGleggeiadsqitassstgaarelgllgwaakiaRlngngl +C+epl + g ++ +++ +sss ++ +a+ +a +n+ mKIAA0868 101 KCDEPL-ISG--LPHVSFSSSSSLSS-------SYAPGYAKINK--- 134 nedygdgaWcpaknsledgifdtddphwilvDLgrklrtvtgvTitGrrr ++g+g+W+p + d ++w++vD+g r+ + i++ r mKIAA0868 135 --RGGAGGWSPSDS---------DHYQWLQVDFGN--RKQISA-IATQGR 170 rgdgngngdwvtyyvvaykddrrdllerlnGetWttykdfdiengtgesk +++ dwvt y + y+d +r +W +y + +g+ mKIAA0868 171 ----YSSSDWVTQYRMLYSDTGR---------NWKPY------HQDGNIW 201 vFggNadagtvvlndfppPivARYvRilPtaentratgwhngiilRlELl +F+gN++++ vv++d+ ++vARYvRi+P+ +n +++i+lR E++ mKIAA0868 202 AFPGNINSDSVVRHDLQHAVVARYVRIVPLDWN-----GEGHIGLRAEVY 246 GC<-* GC mKIAA0868 247 GC 248 LamG: domain 1 of 4, from 275 to 412: score 128.1, E = 9.6e-34 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr + i + F+T +++G+Ll+ +++gd+++leL+ +lvl+ mKIAA0868 275 LkDVIALKFKTSESEGVLLHGEgqQGDYITLELK------KAKLVLS 315 ydlGsst...tggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg ++lGs++ ++++g +++ts+ l+D +WH+V +er+grs++L++D mKIAA0868 316 LNLGSNQlgpIYGHTSVTSG----SLLDDHHWHSVLIERQGRSINLTLD- 360 gnpvsges....t.LdldkeesgplylGGlPe.....lpvspgFrGCirn + ++ +++++ + Ldld + +GG+P ++++++ ++++F+GC+++ mKIAA0868 361 RSMQHFRTngefDyLDLD----YEITFGGIPFsgkpsSSNRKNFKGCMES 406 lrvngk<-* + +ng+ mKIAA0868 407 INYNGV 412 LamG: domain 2 of 4, from 460 to 596: score 108.9, E = 5.8e-28 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl + +s+sf+FrT+ p+GlLl+++ + +++ Lv + ++ + mKIAA0868 460 DlFSVSFQFRTWNPSGLLLFSHfadNLGNVEIDLV------ESKVGV 500 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn ++++ + + + + ++s+ lnDGqWH V++ +++ ++L++D g+ mKIAA0868 501 HINNTQT-KTSQIDISSG----SGLNDGQWHEVRFLAKENFAVLTID-GD 544 pvsges..t.LdldkeesgplylGGlPe.......lpvspgFrGCirnlr ++s++ ++++L+++ ++++++GG ++ ++ + ++ +p+F+GC++ ++ mKIAA0868 545 EASAVRtnSpLQVKT--GEKYFFGGFLNhmnnasySALQPSFQGCMQLIQ 592 vngk<-* v+ + mKIAA0868 593 VDDQ 596 EGF: domain 1 of 2, from 624 to 658: score 22.3, E = 0.066 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C ++ C++G G+C + +s++C+C + Gy+g +C mKIAA0868 624 RCVpnHCEHG-----GKCSqtwdSFKCtCDETGYSGaTCH 658 LamG: domain 3 of 4, from 886 to 1012: score 131.3, E = 1e-34 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry t+ +isf+F+T p+G+ l + + +df+ leL+ + + +++ mKIAA0868 886 TsADISFYFKTLIPRGVFLENLgNTDFIKLELK-----SATEVSFSF 927 dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv d G+ gp+++ + s p plnD qWHrV++ern ++++L+VD +p+ mKIAA0868 928 DVGN----GPVEIVVRS--PSPLNDDQWHRVTAERNVKQASLQVD-RLPQ 970 sges......t.LdldkeesgplylGGlPelpvspgFrGCirnlrvngk< + ++ +++++t+L+l ++l++GG+ ++gF GCir+lr+ng+ mKIAA0868 971 QIRKapteghTrLELY----SQLFVGGAG---GQQGFLGCIRSLRMNGV 1012 -* mKIAA0868 - - EGF: domain 2 of 2, from 1033 to 1069: score 10.8, E = 28 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg..rCe<-* C + + C+nG G+Ci++ ++y+C+C + ++++ C mKIAA0868 1033 HCTsygaNCENG-----GKCIekyhGYSCdCS-NTAYDgtFCN 1069 LamG: domain 4 of 4, from 1115 to 1255: score 108.8, E = 6.4e-28 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr +++i+fsF Tt++ +Lly+++ ++dfla+ ++ + G+l+ r mKIAA0868 1115 AqEQIHFSFSTTKAPCILLYVSslTTDFLAVLVK-----PTGNLQIR 1156 ydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnp y+lG+ t++p+ + +d+ + ++ Gq+H+V+++r +r++ L++D p mKIAA0868 1157 YNLGG--TREPFNIDVDH---RNMANGQPHSVNITRHERTIILKLD-HYP 1200 vsges......t.LdldkeesgplylGGlPe.........lpvspgFrGC ++g+ +++++t ++++ +l+lG + e+++ +++ ++ ++pgF+GC mKIAA0868 1201 AVGYHlpsssdTlFNSP----KSLFLGKVIEtgkidqeihKYNTPGFTGC 1246 irnlrvngk<-* ++++++n+ mKIAA0868 1247 LSRVQFNHI 1255 4.1m: domain 1 of 1, from 1350 to 1368: score 38.8, E = 7.2e-07 *->myrykkRdkGSYhtnEakg<-* ++ry++R+kG+YhtnEakg mKIAA0868 1350 LIRYMFRHKGTYHTNEAKG 1368 //