hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg15527/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0868 ( 1399 res) mbg15527 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Laminin_G_2 Laminin G domain 453.7 1.5e-132 4 Laminin_G_1 Laminin G domain 175.8 7.1e-49 4 F5_F8_type_C F5/8 type C domain 147.5 2.3e-40 1 EGF EGF-like domain 45.0 1.7e-09 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- F5_F8_type_C 1/1 114 245 .. 1 163 [] 147.5 2.3e-40 Laminin_G_2 1/4 283 412 .. 1 141 [] 129.6 5.9e-35 Laminin_G_1 1/4 283 415 .. 1 154 [] 63.4 4.7e-15 Laminin_G_2 2/4 468 596 .. 1 141 [] 103.7 3.6e-27 Laminin_G_1 2/4 468 599 .. 1 154 [] 52.7 7.8e-12 EGF 1/2 625 657 .. 1 39 [] 32.1 1.3e-05 Laminin_G_2 3/4 894 1012 .. 1 141 [] 121.4 1.7e-32 Laminin_G_1 3/4 894 1015 .. 1 154 [] 47.5 3e-10 EGF 2/2 1034 1068 .. 1 39 [] 20.9 0.031 Laminin_G_2 4/4 1123 1255 .. 1 141 [] 111.3 1.8e-29 Laminin_G_1 4/4 1123 1258 .. 1 154 [] 16.1 0.0004 Alignments of top-scoring domains: F5_F8_type_C: domain 1 of 1, from 114 to 245: score 147.5, E = 2.3e-40 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse + ++Ss+ s+s+++g+a+ + +a ++Ws+ mKIAA0868 114 SFSSSSSLSSSYAPGYAKINKRGGA----------------GGWSP- 143 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggngyvksYkiqySd ++ +d+ qwlqvD+g k+i+++ tqgr+++ + +v+ Y+ ySd mKIAA0868 144 SD------SDHYQWLQVDFGNRKQISAIATQGRYSSSD-WVTQYRMLYSD 186 DGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikARY G + nW+++ + +g+ + F+gn ++d++v++++ ++++ARY mKIAA0868 187 TG-R--NWKPYHQ--------DGnIWAFpGNiNSDsVVRHDLQHAVVARY 225 vRivptswnggggiasraEl<-* vRivp++wng+g+i++raE+ mKIAA0868 226 VRIVPLDWNGEGHIGLRAEV 245 Laminin_G_2: domain 1 of 4, from 283 to 412: score 129.6, E = 5.9e-35 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl F+T +++G+Ll+ +g++g d +++LeL+ +lvl+++l mKIAA0868 283 FKT-SESEGVLLHGEGQqG---------D-YITLELKKAKLVLSLNL 318 G......sgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g. G+++ ++ g++++tsg+ l+D +WH+V +er+grs+ L++D + ++ ++ mKIAA0868 319 GsnqlgpIYGhTSVTSGsLLDDHHWHSVLIERQGRSINLTLDRSmQHfRt 368 spgssdtlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCir +++ + +l+l++++ +GG+p s+k+s+ +++F+GC++ mKIAA0868 369 NGEFD---YLDLDYEITFGGIPFSGKPSSSN----------RkNFKGCME 405 dvringe<-* ++ +ng+ mKIAA0868 406 SINYNGV 412 Laminin_G_1: domain 1 of 4, from 283 to 415: score 63.4, E = 4.7e-15 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl F+T+e++G+Ll G+ ++ D++ leL + +l +s++l mKIAA0868 283 FKTSESEGVLL---HGEGQQG--------DYITLELKKAKLVLSLNL 318 Gsghrlrpa....vvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervv Gs+ l p+ ++++v+sg l+D +WH+v +er gr+++L +d mKIAA0868 319 GSN-QLGPIyghtSVTSGSL-LDDHHWHSVLIERQGRSINLTLDRSMQ-- 364 dgespsgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCi + + ++ d+ Ldld++ + +GG+P +s k++ +++ FkGC+ mKIAA0868 365 HFRTNGEFDY----LDLDYE--ITFGGIP---FSGKPSS-SNRKNFKGCM 404 rdvsingkpld<-* ++ ng+++ mKIAA0868 405 ESINYNGVNIT 415 Laminin_G_2: domain 2 of 4, from 468 to 596: score 103.7, E = 3.6e-27 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl FRT + p+GlLl+++ +++ + + + Lv+ ++ ++++ mKIAA0868 468 FRT-WNPSGLLLFSHFAdN--------LG-NVEIDLVESKVGVHINN 504 G..sgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs ++ + ++ ++sg+ lnDGqWH V++ +++ ++L++Dg +++ ++ ++ mKIAA0868 505 TqtKTSqIDISSGsGLNDGQWHEVRFLAKENFAVLTIDGDeASaVrTNSP 554 sdtlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCirdvri ++ + + +++GG+ +++ + + +++F+GC++ +++ mKIAA0868 555 L---QVKTGEKYFFGGFLNHMNNASYSAL--------QpSFQGCMQLIQV 593 nge<-* +++ mKIAA0868 594 DDQ 596 Laminin_G_1: domain 2 of 4, from 468 to 599: score 52.7, E = 7.8e-12 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl FRT++psGlLl+ ++n + + + Lv ++ v+ ++ mKIAA0868 468 FRTWNPSGLLLFSHFADNLGN----------VEIDLVESKVGVHINN 504 GsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervvdges ++ ++ + sg lnDG+WH v + + ++L +dg e + ++ mKIAA0868 505 TQT-KTSQIDISSGSG-LNDGQWHEVRFLAKENFAVLTIDGDEA-SAVRT 551 psgpditsenLdldtppiLyvGGlPel..qksvkrrlaaistsFkGCird + +p++ +++ ++ ++GG+ +++s+++++ +sF GC++ mKIAA0868 552 N-SPLQ----VKTGEK--YFFGGFLNHmnNASYSALQ----PSFQGCMQL 590 vsingkpld<-* + +++++++ mKIAA0868 591 IQVDDQLVN 599 EGF: domain 1 of 2, from 625 to 657: score 32.1, E = 1.3e-05 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C pn C +gG+C +t+++++C C++ +y+G +C mKIAA0868 625 CVPN--HCEHGGKCSQTWDSFKCTCDET----GYSGATC 657 Laminin_G_2: domain 3 of 4, from 894 to 1012: score 121.4, E = 1.7e-32 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGr.lvlryd F+T p G+ l + g+++ f+ LeL+ +++ +++d mKIAA0868 894 FKT-LIPRGVFLENLGNtD-----------FIKLELKSATeVSFSFD 928 lG.sgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs G+++ +++++s+++lnD qWH+V++ern ++++L+VD +++ +++p + mKIAA0868 929 VGnGPVeIVVRSPsPLNDDQWHRVTAERNVKQASLQVDRLpQQiRkAPTE 978 sdtlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCirdvri ++t l+l ++l++GG+ ++gF GCir++r+ mKIAA0868 979 GHT-RLELYSQLFVGGAGG------------------QqGFLGCIRSLRM 1009 nge<-* ng+ mKIAA0868 1010 NGV 1012 Laminin_G_1: domain 3 of 4, from 894 to 1015: score 47.5, E = 3e-10 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdG.rlevsyd F+T p G+ l + + DF+ leL +++ +s+d mKIAA0868 894 FKTLIPRGVFL------ENLGNT------DFIKLELKSAtEVSFSFD 928 lGsghrlrp..avvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervvd +G+g p ++vvrs+ + lnD +WHrv++ern ++++L+Vd + mKIAA0868 929 VGNG----PveIVVRSPSP-LNDDQWHRVTAERNVKQASLQVDRLPQ--Q 971 gespsgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCir +++ p+ ++ L l + L+vGG++ + + +F GCir mKIAA0868 972 IRKA--PTEGHTRLELYSQ--LFVGGAG---------G---QQGFLGCIR 1005 dvsingkpld<-* ++++ng+ ld mKIAA0868 1006 SLRMNGVTLD 1015 EGF: domain 2 of 2, from 1034 to 1068: score 20.9, E = 0.031 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C++ +C ngG+C++ +gy+C+C +y+G +C mKIAA0868 1034 CTSYGANCENGGKCIEKYHGYSCDCSNT----AYDGTFC 1068 Laminin_G_2: domain 4 of 4, from 1123 to 1255: score 111.3, E = 1.8e-29 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLv.dGrlvlryd F T t++ +Lly+++ ++ d fla+ +++ G l++ry+ mKIAA0868 1123 FST-TKAPCILLYVSSLtT---------D-FLAVLVKpTGNLQIRYN 1158 lG..sgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g.spg lG+++++ + ++++++++Gq H+V ++r++r++ L++D +++v++++p+ mKIAA0868 1159 LGgtREPfNIDVDHrNMANGQPHSVNITRHERTIILKLDHYpAVgYhLPS 1208 ssdtlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCirdvr ssdt +n +++l+lG + e +k + ++ ++gF+GC+++v+ mKIAA0868 1209 SSDT-LFNSPKSLFLGKVIETGKIDQEIHKYN------TpGFTGCLSRVQ 1251 inge<-* +n++ mKIAA0868 1252 FNHI 1255 Laminin_G_1: domain 4 of 4, from 1123 to 1258: score 16.1, E = 0.0004 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLv.dGrlevsyd F+Tt+ +Ll Y + t + Fla+ + G+l+++y+ mKIAA0868 1123 FSTTKAPCILL--YVSSLTTD---------FLAVLVKpTGNLQIRYN 1158 lGsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervvdge lG + +p + + r+ ++G+ H+v ++r++r ++L++d v + mKIAA0868 1159 LGGTR--EPFNIDVDHRNMANGQPHSVNITRHERTIILKLDHYPA-VGYH 1205 spsgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCirdv ps++d+ + + L++G e k +++ + ++++F GC+ +v mKIAA0868 1206 LPSSSDT---LFNSPKS--LFLGKVIETGKIDQEIHKYNTPGFTGCLSRV 1250 singkpld<-* +n+ + mKIAA0868 1251 QFNHIAPL 1258 //