hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg11091/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0867  ( 240 res)   mbg11091

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HLH      helix loop helix domain                         45.7    5.9e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HLH        1/1     168   218 ..     1    61 []    45.7  5.9e-09

Alignments of top-scoring domains:
HLH: domain 1 of 1, from 168 to 218: score 45.7, E = 5.9e-09
                   *->narERrlrRRekiNeqafdeLrslvPtlpkgggnskKlsKasiLrlA
                        +E+  +RR +i+  +f++L sl+       +nsk++s a +L+++
   mKIAA0867   168    ISAEQ--KRRFNIRM-GFNTLNSLIS------NNSKQTSHAITLQKT 205  

                   ieYIrksLqeqlqe<-*
                   +eYI  +Lq++  +   
   mKIAA0867   206 MEYI-TKLQQERMQ    218  

//