hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg11091/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0867  ( 240 res)   mbg11091

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
HLH        Helix-loop-helix DNA-binding domain           41.8    1.6e-08   1
Keratin_B2 Keratin, high sulfur B2 protein              -76.5       0.97   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Keratin_B2   1/1      53   156 ..     1   177 []   -76.5     0.97
HLH          1/1     163   213 ..     1    53 []    41.8  1.6e-08

Alignments of top-scoring domains:
Keratin_B2: domain 1 of 1, from 53 to 156: score -76.5, E = 0.97
                   *->qtScCGfptCStlgtrPsCGsscCQPsCCeSCCQpsCcqpSCCqPtc
                      + S     + S   tr s ++ ++           +  qpS   P  
   mKIAA0867    53    TVSPSNVVIASAAITRASGVTEFLSH--------STSSQPS---P-- 86   

                   sqtscCqPtcfqssCCrPsCcqTSCCqPtCcqsssCqtgCgigGsiGyGQ
                       +++   f++s  + s ++           +s+  g           
   mKIAA0867    87 ----VSRL--FSPSTVQDSLVK--------GEQVSLHGGS---------- 112  

                   eGsSGAvScrirWCRPdCrvegtClPpCCvvsCtaPTCCqpvsaQasCCR
                                      v+ t   + C           p s Qas C 
   mKIAA0867   113 -----------------PQVPATGSSRDC-----------PNSGQASPC- 133  

                   PsCqPyCgqsCCRPaCccsvtCtrTccePc<-*
                   Ps q   + + ++  C++       ++ P    
   mKIAA0867   134 PSEQSPSP-QSPQNNCSGK------STDPK    156  

HLH: domain 1 of 1, from 163 to 213: score 41.8, E = 1.6e-08
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                       R++h  +E++RR +i+ +f +L +l+ + + sk  s a +L+++ e
   mKIAA0867   163    NRQKHISAEQKRRFNIRMGFNTLNSLISN-N-SKQTSHAITLQKTME 207  

                   YIksLq<-*
                   YI +Lq   
   mKIAA0867   208 YITKLQ    213  

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