hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp09319/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0865  ( 1183 res)   mbp09319

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MYSc     Myosin. Large ATPases.                        -221.5    4.4e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MYSc       1/1       2   408 ..     1   771 []  -221.5  4.4e-18

Alignments of top-scoring domains:
MYSc: domain 1 of 1, from 2 to 408: score -221.5, E = 4.4e-18
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                                                                     
   mKIAA0865     -    ----------------------------------------------- -    

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                       +l                                            
   mKIAA0865     2 ----NL-------------------------------------------- 3    

                   keNQsIiISGESGAGKTEatKkimqYLAavsgsvesvedqiLesNPiLEA
                                                                     
   mKIAA0865     - -------------------------------------------------- -    

                   FGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQakg
                                                                     
   mKIAA0865     - -------------------------------------------------- -    

                   ERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfankrys
                                                                     
   mKIAA0865     - -------------------------------------------------- -    

                   sgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAILHLG
                                                                     
   mKIAA0865     - -------------------------------------------------- -    

                   NieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtkRki
                                                                     
   mKIAA0865     - -------------------------------------------------- -    

                   ktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl....
                                            LAK +YsRLF++L++ +N  l++++
   mKIAA0865     4 -------------------------LAKSLYSRLFGFLINTVNCCLqnqd 28   

                   .....sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlE
                   + ++ +++ IG+LDI+GFE F+kN FEQ+C N +NEK+  +  +  F +E
   mKIAA0865    29 eykslQTLDIGILDIFGFEEFQKNEFEQLCVNLTNEKMHHYIQEVLFLQE 78   

                   QEEYerEGIeW.tfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClfH
                   Q E ++EG+  +t    +  +   ++D   +K   P G +slLDEe+ + 
   mKIAA0865    79 QTECVQEGVAMeTACSPG--NQAGVLDFFFQK---PSGFFSLLDEESQV- 122  

                   AqPkgTDqtFleKLnkalyhqhhkkhphfskprkS.lkk.gkp.kkrfgr
                       +   ++  KL++ l     +++++ +    S++k +  +   +   
   mKIAA0865   123 --IWSGEPNLPRKLQGLL----ESSNTNAVY---SpVKDgNGNvAFKGQG 163  

                   taFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpee
                   +aF++ HYAG+V Y+  G +e NkD L+++l+ ++++S n +i  LF++ 
   mKIAA0865   164 AAFTVMHYAGRVMYEMGGAVE-NKDSLSQNLLFVMKTSENVVISHLFQSK 212  

                   adqsssaakekssggagksrkagrrepsk.....................
                    +q+                        ++  ++ ++ + ++++++  ++
   mKIAA0865   213 LSQT------------------------Gslissypsfkfgghkstllsk 238  

                   ................................gtisskkrppTvGsqFk.
                   ++ ++  + +++  + ++  +++++++  ++      ++ p T++sq  +
   mKIAA0865   239 rtassmvgvnknylelskllkkkgtstflqrlE----RGEPATAASQLTk 284  

                   sLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniR
                   sL++  ++L   +PHFI CIKPN  ++pgvFd   V  QL+ylGvL  +R
   mKIAA0865   285 SLADITAKLQRGSPHFILCIKPNTSQLPGVFDHFYVSAQLQYLGVLGLVR 334  

                   IRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealL
                   + r G+P+R +f++Fl RY+ L++  +  ++g       + a + c+++L
   mKIAA0865   335 LFRSGYPVRPSFEDFLSRYEPLASVLLGETKG-------QAAEERCRLVL 377  

                   qslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                   q+++          +++qiG  KvFl+ + ++  L +l  +   
   mKIAA0865   378 QRCK---------LQGWQIGVHKVFLK-YWHVDQLSDLWLQ    408  

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