hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbp/mbp09319/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0865 ( 1183 res) mbp09319 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IQ IQ calmodulin-binding motif 23.2 0.0062 1 Extensin_2 Extensin-like region -144.2 0.76 1 Myosin_head Myosin head (motor domain) -262.2 5.3e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Myosin_head 1/1 1 395 [. 1 795 [] -262.2 5.3e-06 IQ 1/1 410 430 .. 1 21 [] 23.2 0.0062 Extensin_2 1/1 737 1040 .. 1 385 [] -144.2 0.76 Alignments of top-scoring domains: Myosin_head: domain 1 of 1, from 1 to 395: score -262.2, E = 5.3e-06 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrlp mKIAA0865 - ----------------------------------------------- - iYteeiiakYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA mKIAA0865 - -------------------------------------------------- - GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqiLqsNPiLEA mKIAA0865 - -------------------------------------------------- - FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy + mKIAA0865 1 ----------------------------V--------------------- 1 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc + mKIAA0865 2 --------------------------------------------N----- 2 ytvyrrDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNie + mKIAA0865 3 --L----------------------------------------------- 3 GFkqdqatTGkeeqAGvtvsedteealeiiaeLLGvDaeeLekaLlsrri mKIAA0865 - -------------------------------------------------- - ktGgggkrretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsa LAK +YsRLF ++++ +N L+ mKIAA0865 4 ---------------------------LAKSLYSRLFGFLINTVNCCLQN 26 keQasdSrGGqaaegdDTVSITVVdlPraaldkranf....IGvLDIyGF ++ + + ++ +IG+LDI+GF mKIAA0865 27 QD------------------------------EYKSLqtldIGILDIFGF 46 EIFaekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyg E F +kN FEQLc+N +NEK+ + + F EQ E ++Eg++ + mKIAA0865 47 EEF-QKNEFEQLCVNLTNEKMHHYIQEVLFLQEQTECVQEGVAMETACS- 94 lDnqa.cidLIEkKmkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskh nqa++ d kP G +slLDEe+ + + + ++ +KL + + + mKIAA0865 95 PGNQAgVLDFFFQ--KPSGFFSLLDEESQVIWSGEPNLPRKLQGLL-ESS 141 prlthFaqkpgrfkkgk.srqgkteFiikHYAGdVeYnaegfleKNkDpL ++ ++ + +++ + ++ ++F++ HYAG+V+Y+ g e NkD L mKIAA0865 142 NTNAVY-SPVKDGNGNVaFKGQGAAFTVMHYAGRVMYEMGGAVE-NKDSL 189 fddlisllksSsdvpllaeLFpeeel...................seaAn +++l+ ++k S + ++ LF++ + ++++ ++ ++ + +++++ ++ mKIAA0865 190 SQNLLFVMKTSEN-VVISHLFQSKLSqtgslissypsfkfgghksTLLSK 238 rrnkapdfeadfdeeeaaaksaklgsgkgksgkkknfleTvgsqfkeslg r++ ++ ++ e ++ +k+ s + + + T++sq sl+ mKIAA0865 239 RTASSMVGVNKNYLELSKLLKKKGTSTFLQRLERGEP-ATAASQLTKSLA 287 eLmktLsstAnlnPHfvRCIKPNekKkagqFDaslVlhQlrclGvLEigi + L +PHf++CIKPN + +g+FD V Ql++lGvL + mKIAA0865 288 DITAKLQRG---SPHFILCIKPNTSQLPGVFDHFYVSAQLQYLGVLG-LV 333 RirraGFPnRitfdeFlqRYrlLapktwpsgfrpkwvgdakkgceliLqs R+ r G+P R+ f +Fl+RY+ La++ ++++ +a++ c+l+Lq mKIAA0865 334 RLFRSGYPVRPSFEDFLSRYEPLASVLLGETK----GQAAEERCRLVLQR 379 lrqtpgnldkeeyrfGkTKiFfR<-* +l +++G K+F++ mKIAA0865 380 C-----KL--QGWQIGVHKVFLK 395 IQ: domain 1 of 1, from 410 to 430: score 23.2, E = 0.0062 *->rraaikIQaawRGylaRkryk<-* +r +++ Q+++RG+laR+++ mKIAA0865 410 QRKIVTCQKVIRGFLARQHLL 430 Extensin_2: domain 1 of 1, from 737 to 1040: score -144.2, E = 0.76 *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPP....pPsp ++ ++ a + ps+ +++ PPp + + PP pP p mKIAA0865 737 KAIILEAAEGNCQPSKDTCDI-----PPPFPNLLPHRPPllvfPPTP 778 kyvykSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSP v +SP +SP P v+k P Y p + +SP mKIAA0865 779 --VTRSPASD------ESPLTPLEVKKLPVLETNLKY----PVQSEGSSP 816 PpPv.........ykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpp +P ++ +++++ SP P+ + SPP p pPpp mKIAA0865 817 LSPQyskaqkgdnDQLASPGFPV---FNGPSRISPPATP-------PPPP 856 tPvYkYkSPPPPpyvYkspPpPvkkripyvYkSPPPPpPYvYkSpPppvk P PP P PpP + PPP P Ppp mKIAA0865 857 GP------PPAP-----CGPPPAPC--------GPPPAP----CGPPPA- 882 kyiyksppppephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksY + ppp p PPP P s+ P P +++ mKIAA0865 883 ----PCGPPPAPC------GPPPAPCGAASAS------CGVAPAPCRPPT 916 kspsppkyVYkSpPpPvipykYkSPPPPkkkyspaPrkpyvYkSPPPPty ++ pp+ V + + P ++k+s+aP+ P P + mKIAA0865 917 HFAFPPESVLVTAAKAL---TNSDLPRTQPKPSSAPV-------PGPCSS 956 vYkSpPpPyk....pptppkiyksPPPPtPvyvYkspPpippiksssppP k p P k+ + + sPP P spP p+ s++ + mKIAA0865 957 FVKAPYSPGKtaraDLRKTSSTFSPPSP------YSPPNSRPLSSPLDEL 1000 vyvYkSpPppvysPPPPyvYssPPPPvyvynsaPvykksPPkhhYiYsSP + ++S + + + sS mKIAA0865 1001 ASLFNSGRSVL---------------RRSAVGRRIREAEGFETNMNLSSR 1035 PPphh<-* p mKIAA0865 1036 DEPSS 1040 //