hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05774/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0863  ( 1208 res)   mbg05774

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     55.1    8.9e-12   9
HOX      Homeodomain                                     26.5    0.00061   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/9     116   139 ..     1    23 []    14.8      6.7
ZnF_C2H2   2/9     149   171 ..     1    23 []     2.7  1.6e+02
ZnF_C2H2   3/9     198   221 ..     1    23 []    14.0      8.2
ZnF_C2H2   4/9     258   283 ..     1    23 []    13.0       11
ZnF_C2H2   5/9     739   761 ..     1    23 []    11.8       15
ZnF_C2H2   6/9     767   789 ..     1    23 []     5.6       74
ZnF_C2H2   7/9     820   841 ..     1    23 []     0.4  2.9e+02
ZnF_C2H2   8/9     843   866 ..     1    23 []    15.0      6.4
ZnF_C2H2   9/9     948   971 ..     1    23 []    21.4     0.13
HOX        1/1    1116  1178 ..     1    63 []    26.5  0.00061

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 9, from 116 to 139: score 14.8, E = 6.7
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ C +s++  ++Lk+H+ + H   
   mKIAA0863   116    YCCSL-CRYSTKVLtSLKNHLHrYH    139  

ZnF_C2H2: domain 2 of 9, from 149 to 171: score 2.7, E = 1.6e+02
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                        Cp  C++s s+++   +H r  H   
   mKIAA0863   149    IPCPN-CPFS-SQPrVVGKHFRmFH    171  

ZnF_C2H2: domain 3 of 9, from 198 to 221: score 14.0, E = 8.2
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C + C++s + + ++k+H+   H   
   mKIAA0863   198    FTCLK-CNFSNTLYySMKKHVLvAH    221  

ZnF_C2H2: domain 4 of 9, from 258 to 283: score 13.0, E = 11
                   *->ykCpigCgksfssk.aLkrHmr...vH<-*
                      y C++ C+   ss++aL  H+ +++ H   
   mKIAA0863   258    YYCKK-CSAIASSQdALMYHILtsdAH    283  

ZnF_C2H2: domain 5 of 9, from 739 to 761: score 11.8, E = 15
                   *->ykCpigCgksfsskaLkrHmr.vH<-*
                       +Cp+ C++ f+s  ++ Hm   H   
   mKIAA0863   739    KTCPV-CNELFPSNVYQVHMEvAH    761  

ZnF_C2H2: domain 6 of 9, from 767 to 789: score 5.6, E = 74
                   *->ykCpigCgksfsskaLkrHmr.vH<-*
                        C++ C++ f+   ++ Hm   H   
   mKIAA0863   767    QLCQV-CNELFPANVYQVHMEvAH    789  

ZnF_C2H2: domain 7 of 9, from 820 to 841: score 0.4, E = 2.9e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C   C+ +  s+++L +H+ +H   
   mKIAA0863   820    VRCLS-CK-CLVSQeELMHHLLMH    841  

ZnF_C2H2: domain 8 of 9, from 843 to 866: score 15.0, E = 6.4
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C + C+ +f++ + L++H r++H   
   mKIAA0863   843    LGCLF-CPCTFHDVrGLVEHSRtKH    866  

ZnF_C2H2: domain 9 of 9, from 948 to 971: score 21.4, E = 0.13
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++Cp+ C  +f +++a++ H++++H   
   mKIAA0863   948    LTCPF-CLSTFMTAdAYELHLKeRH    971  

HOX: domain 1 of 1, from 1116 to 1178: score 26.5, E = 0.00061
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      + ++  +  +e  ++L+++F++ pYPsr+e e L+  L   +  V  
   mKIAA0863  1116    PSKYEGRSYEEKKQFLRDYFHRRPYPSRKEVELLSSLLWVWKIDVAS 1162 

                   WFQNRRakwkrqekkk<-*
                    F  RR+ + +  k +   
   mKIAA0863  1163 FFGKRRYICMKAIKTH    1178 

	[output cut off at A = 10 top alignments]
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