hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpj/mpj01572/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0862 ( 584 res) mpj01572 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_PS Leucine-rich repeat, plant-specific subfamil 206.8 1.9e-57 18 LRR_TYP Leucine-rich repeats, typical (most populate 175.3 5.9e-48 16 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_PS 1/18 124 146 .. 1 24 [] 18.6 0.9 LRR_TYP 1/16 124 146 .. 1 24 [] 21.1 0.16 LRR_PS 2/18 147 169 .. 1 24 [] 18.0 1.4 LRR_TYP 2/16 147 169 .. 1 24 [] 14.5 7.1 LRR_PS 3/18 170 192 .. 1 24 [] 15.0 10 LRR_TYP 3/16 170 192 .. 1 24 [] 15.4 5.5 LRR_PS 4/18 193 215 .. 1 24 [] 12.2 31 LRR_TYP 4/16 193 215 .. 1 24 [] 13.7 8.9 LRR_TYP 5/16 216 237 .. 1 24 [] 8.2 42 LRR_PS 5/18 216 238 .. 1 24 [] 14.4 16 LRR_PS 6/18 239 261 .. 1 24 [] 16.5 3.8 LRR_TYP 6/16 239 262 .. 1 24 [] 24.7 0.012 LRR_PS 7/18 262 284 .. 1 24 [] 17.7 1.7 LRR_PS 8/18 285 307 .. 1 24 [] 19.2 0.58 LRR_TYP 7/16 285 308 .. 1 24 [] 17.5 1.8 LRR_PS 9/18 308 330 .. 1 24 [] 20.5 0.24 LRR_TYP 8/16 309 331 .. 1 24 [] 16.0 4.6 LRR_TYP 9/16 332 355 .. 1 24 [] 4.1 1.3e+02 LRR_PS 10/18 356 378 .. 1 24 [] 9.5 70 LRR_TYP 10/16 356 379 .. 1 24 [] 3.8 1.4e+02 LRR_PS 11/18 380 402 .. 1 24 [] 0.7 9.7e+02 LRR_TYP 11/16 403 425 .. 1 24 [] 5.0 1e+02 LRR_PS 12/18 403 425 .. 1 24 [] 14.9 11 LRR_TYP 12/16 426 448 .. 1 24 [] 19.4 0.5 LRR_PS 13/18 426 448 .. 1 24 [] 18.8 0.77 LRR_TYP 13/16 449 471 .. 1 24 [] 19.3 0.54 LRR_PS 14/18 449 471 .. 1 24 [] 18.4 0.99 LRR_PS 15/18 472 494 .. 1 24 [] 17.2 2.3 LRR_TYP 14/16 472 494 .. 1 24 [] 18.5 0.93 LRR_TYP 15/16 495 516 .. 1 24 [] 16.7 3.4 LRR_PS 16/18 495 517 .. 1 24 [] 20.2 0.29 LRR_PS 17/18 518 541 .. 1 24 [] 7.4 1.3e+02 LRR_TYP 16/16 518 542 .. 1 24 [] 6.4 69 LRR_PS 18/18 542 564 .. 1 24 [] 4.8 2.9e+02 Alignments of top-scoring domains: LRR_PS: domain 1 of 18, from 124 to 146: score 18.6, E = 0.9 *->LtsLqvLdLsnNnLsGeIPsslgn<-* Lt+L++L+L++N+L ++P++ g mKIAA0862 124 LTQLTELYLYSNKLQ-SLPAEVGC 146 LRR_TYP: domain 1 of 16, from 124 to 146: score 21.1, E = 0.16 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L+eL+L +N+L+sLP+++ ++ mKIAA0862 124 LTQLTELYLYSNKLQSLPAEV-GC 146 LRR_PS: domain 2 of 18, from 147 to 169: score 18.0, E = 1.4 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L +L Ls+N+L+ ++P+sl n mKIAA0862 147 LVNLMTLALSENSLT-SLPDSLDN 169 LRR_TYP: domain 2 of 16, from 147 to 169: score 14.5, E = 7.1 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL +L Ls N LtsLP+ + ++ mKIAA0862 147 LVNLMTLALSENSLTSLPDSL-DN 169 LRR_PS: domain 3 of 18, from 170 to 192: score 15.0, E = 10 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L+ LdL +N+L eIPs + mKIAA0862 170 LKKLRMLDLRHNKLR-EIPSVVYR 192 LRR_TYP: domain 3 of 16, from 170 to 192: score 15.4, E = 5.5 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +Lr LdL +N+L+++P+ + mKIAA0862 170 LKKLRMLDLRHNKLREIPSVV-YR 192 LRR_PS: domain 4 of 18, from 193 to 215: score 12.2, E = 31 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L sL++L+L +N+++ ++ +++ n mKIAA0862 193 LDSLTTLYLRFNRIT-TVEKDIKN 215 LRR_TYP: domain 4 of 16, from 193 to 215: score 13.7, E = 8.9 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +L++L+L +N++t++ ++ + mKIAA0862 193 LDSLTTLYLRFNRITTVEKDI-KN 215 LRR_TYP: domain 5 of 16, from 216 to 237: score 8.2, E = 42 *->LpnLreLdLsnNqLtsLPpgaFqg<-* Lp+L L+ N++++LP+++ g mKIAA0862 216 LPKLSMLSIRENKIKQLPAEI--G 237 LRR_PS: domain 5 of 18, from 216 to 238: score 14.4, E = 16 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L+ L + +N++ ++P+++g mKIAA0862 216 LPKLSMLSIRENKIK-QLPAEIGE 238 [output cut off at A = 10 top alignments] //