hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpj/mpj01572/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0862 ( 584 res) mpj01572 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_1 Leucine Rich Repeat 178.4 1.2e-49 19 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_1 1/19 126 148 .. 1 25 [] 13.1 6.7 LRR_1 2/19 149 171 .. 1 25 [] 13.9 3.8 LRR_1 3/19 172 194 .. 1 25 [] 13.9 3.9 LRR_1 4/19 195 217 .. 1 25 [] 16.4 0.71 LRR_1 5/19 218 240 .. 1 25 [] 7.4 1.2e+02 LRR_1 6/19 241 263 .. 1 25 [] 16.1 0.84 LRR_1 7/19 264 286 .. 1 25 [] 12.0 14 LRR_1 8/19 287 309 .. 1 25 [] 10.9 31 LRR_1 9/19 310 333 .. 1 25 [] 16.7 0.56 LRR_1 10/19 334 357 .. 1 25 [] 4.3 3.8e+02 LRR_1 11/19 358 381 .. 1 25 [] 9.3 57 LRR_1 12/19 382 404 .. 1 25 [] 10.4 38 LRR_1 13/19 405 427 .. 1 25 [] 9.9 46 LRR_1 14/19 428 450 .. 1 25 [] 16.5 0.64 LRR_1 15/19 451 473 .. 1 25 [] 17.7 0.28 LRR_1 16/19 474 496 .. 1 25 [] 15.9 0.99 LRR_1 17/19 497 519 .. 1 25 [] 12.2 12 LRR_1 18/19 520 543 .. 1 25 [] 13.5 4.9 LRR_1 19/19 544 567 .. 1 25 [] 4.6 3.4e+02 Alignments of top-scoring domains: LRR_1: domain 1 of 19, from 126 to 148: score 13.1, E = 6.7 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L+eL+L + N +l+ slp++ + l mKIAA0862 126 QLTELYLYS-N-KLQ-SLPAEVgCLV 148 LRR_1: domain 2 of 19, from 149 to 171: score 13.9, E = 3.8 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL +L Ls N sl+ slp+sl++l+ mKIAA0862 149 NLMTLALSE-N-SLT-SLPDSLdNLK 171 LRR_1: domain 3 of 19, from 172 to 194: score 13.9, E = 3.9 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L+ LdL++ N +l +++p+ l mKIAA0862 172 KLRMLDLRH-N-KL-REIPSVVyRLD 194 LRR_1: domain 4 of 19, from 195 to 217: score 16.4, E = 0.71 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L++L+L+ N +++ ++++++++lp mKIAA0862 195 SLTTLYLRF-N-RIT-TVEKDIkNLP 217 LRR_1: domain 5 of 19, from 218 to 240: score 7.4, E = 1.2e+02 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L L+++ N ++ + lp++++ l mKIAA0862 218 KLSMLSIRE-N-KI-KQLPAEIgELC 240 LRR_1: domain 6 of 19, from 241 to 263: score 16.1, E = 0.84 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL +Ld+ + N +l+ +lp+++++++ mKIAA0862 241 NLITLDVAH-N-QLE-HLPKEIgNCT 263 LRR_1: domain 7 of 19, from 264 to 286: score 12.0, E = 14 *->nLeeLdLsgCNpslsgslppsl.glp<-* ++++LdL++ N l +lp+ +++l+ mKIAA0862 264 QITNLDLQH-N-DLL-DLPDTIgNLS 286 LRR_1: domain 8 of 19, from 287 to 309: score 10.9, E = 31 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L L L++ N +ls +p sl +++ mKIAA0862 287 SLNRLGLRY-N-RLS-AIPRSLaKCS 309 LRR_1: domain 9 of 19, from 310 to 333: score 16.7, E = 0.56 *->nLeeLdLsgCNpslsgslpps.l.glp<-* LeeL+L++ N ++s +lp+s l++l mKIAA0862 310 ALEELNLEN-N-NIS-TLPESlLsSLV 333 LRR_1: domain 10 of 19, from 334 to 357: score 4.3, E = 3.8e+02 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L +L L + N ++ p ++ + ++ mKIAA0862 334 KLNSLTLAR-N-CFQ-LYPVGgPsQFS 357 LRR_1: domain 11 of 19, from 358 to 381: score 9.3, E = 57 *->nLeeLdLsgCNpslsgslpps.l.glp<-* ++ +L++++ N +++ +p + ++ + mKIAA0862 358 TIYSLNMEH-N-RIN-KIPFGiFsRAK 381 LRR_1: domain 12 of 19, from 382 to 404: score 10.4, E = 38 *->nLeeLdLsgCNpslsgslppsl.glp<-* L +L++ + N +l+ slp +++ + mKIAA0862 382 VLSKLNMKD-N-QLT-SLPLDFgTWT 404 LRR_1: domain 13 of 19, from 405 to 427: score 9.9, E = 46 *->nLeeLdLsgCNpslsgslppsl.glp<-* + eL+L N +l+ +p++ +gl mKIAA0862 405 SMVELNLAT-N-QLT-KIPEDVsGLV 427 LRR_1: domain 14 of 19, from 428 to 450: score 16.5, E = 0.64 *->nLeeLdLsgCNpslsgslppsl.glp<-* +Le+L Ls+ N l + lp +l++l+ mKIAA0862 428 SLEVLILSN-N-LL-KKLPHGLgNLR 450 LRR_1: domain 15 of 19, from 451 to 473: score 17.7, E = 0.28 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L+eLdL+ N +l+ slp+++ l+ mKIAA0862 451 KLRELDLEE-N-KLE-SLPNEIaYLK 473 LRR_1: domain 16 of 19, from 474 to 496: score 15.9, E = 0.99 *->nLeeLdLsgCNpslsgslppsl.glp<-* L++L L + N +ls +lp ++++l+ mKIAA0862 474 DLQKLVLTN-N-QLS-TLPRGIgHLT 496 LRR_1: domain 17 of 19, from 497 to 519: score 12.2, E = 12 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL++L L+ N l+ +lp++++ l mKIAA0862 497 NLTHLGLGE-N-LLT-HLPEEIgTLE 519 LRR_1: domain 18 of 19, from 520 to 543: score 13.5, E = 4.9 *->nLeeLdLsgCNpslsgslppsl.glp<-* nLeeL+L++ Np+l slp +l ++ mKIAA0862 520 NLEELYLND-NPNLH-SLPFELaLCS 543 LRR_1: domain 19 of 19, from 544 to 567: score 4.6, E = 3.4e+02 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L + ++++C +ls +lpp g p mKIAA0862 544 KLSIMSIENC--PLS-HLPPQiVaGGP 567 //