hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbp/mbp00020/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0860 ( 539 res) mbp00020 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Ubox Modified RING finger domain 64.7 1.2e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Ubox 1/1 262 331 .. 1 72 [] 64.7 1.2e-14 Alignments of top-scoring domains: Ubox: domain 1 of 1, from 262 to 331: score 64.7, E = 1.2e-14 *->eFiCPIslevMeDPVilpsGK..gqTyERraIekwlksgGrhgtcPv eF++PI+le+M +P++lpsGK +q ++ ++g+ ++++P+ mKIAA0860 262 EFLDPITLEIMPCPMLLPSGKviDQSTLEKCNLSEAAWGR-VPSDPF 307 TgqpLpthedLiPnKtglalKslIqew<-* Tg ++ ++ P+ ++lK++I+ + mKIAA0860 308 TGLAFTPQSQPLPH---PSLKARIDRF 331 //