hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp00020/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0860  ( 539 res)   mbp00020

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
U-box    U-box domain                                   155.9    7.1e-43   1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           17.6      0.015   1
FYVE     FYVE zinc finger                                -7.7       0.04   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
U-box      1/1     258   338 ..     1    81 []   155.9  7.1e-43
zf-C3HC4   1/1     481   525 ..     1    50 []    17.6    0.015
FYVE       1/1     473   531 ..     1    77 []    -7.7     0.04

Alignments of top-scoring domains:
U-box: domain 1 of 1, from 258 to 338: score 155.9, E = 7.1e-43
                   *->DiPDEFlDPItleLMkDPVilPSGkityDRstIerHLlsEA.WGvdp
                      D+P+EFlDPItle+M++P+ lPSG +++D+st+e+++lsEA WG+ p
   mKIAA0860   258    DVPEEFLDPITLEIMPCPMLLPSG-KVIDQSTLEKCNLSEAaWGRVP 303  

                   tDPftGRepLthdeliPNleLKekIdafleekrea<-*
                   +DPftG ++++++++ P+++LK++Id+fl +++++   
   mKIAA0860   304 SDPFTGLAFTPQSQPLPHPSLKARIDRFLLQHSIS    338  

zf-C3HC4: domain 1 of 1, from 481 to 525: score 17.6, E = 0.015
                   *->CrICleelkepsnd.fplilpCgHsGslkyfCrsClerwlsssgntt
                      C+ C++ ++  s+++    lpCgH       Cr+Cl++ ++ s ++ 
   mKIAA0860   481    CASCKQAFSSYSTNePVYQLPCGHL-----LCRPCLSEKQR-SQPMM 521  

                   CplC<-*
                   C  C   
   mKIAA0860   522 CTAC    525  

FYVE: domain 1 of 1, from 473 to 531: score -7.7, E = 0.04
                   *->phWvpDeevsnCmrCgkpFtk......ltkRrHHCRaCGrifCgsCs
                      p+ v   e   C +C++ F++ ++++++ +       CG++ C+ C+
   mKIAA0860   473    PRSVSGPE---CASCKQAFSSystnepVYQ-----LPCGHLLCRPCL 511  

                   sktvllpylgiaallkndviekpvRVCdsCydrlnk<-*
                   s++ +++++                 C  C +       
   mKIAA0860   512 SEKQRSQPM----------------MCTACRQPVTS    531  

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