hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02428/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0858  ( 1625 res)   mbg02428

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      43.7    2.5e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1     986  1058 ..     1    80 []    43.7  2.5e-08

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 986 to 1058: score 43.7, E = 2.5e-08
                   *->gglGfsivg...gifvssvvpGspAakaGrkslglLkvGDvIleVNG
                      + +Gf+i+ + +gifv+sv+ GspA+ +       L+v D+Il++N+
   mKIAA0858   986    PVFGFTIKWdisGIFVASVEQGSPAEFSQ------LQVDDEILAINN 1026 

                   etsve...gltheeavdllkkaggggvGekvtLtvlRgg<-*
                    t  + ++++  ee+++  +++g       +++ v+R g   
   mKIAA0858  1027 -TKFSykdTKKWEEVMANAQETG------NLVMDVRRYG    1058 

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