hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpf/mpf00136/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0857 ( 1353 res) mpf00136 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- C2 C2 domain 36.4 6.3e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- C2 1/1 56 163 .. 1 88 [] 36.4 6.3e-07 Alignments of top-scoring domains: C2: domain 1 of 1, from 56 to 163: score 36.4, E = 6.3e-07 *->LrVtvieAknLppkDf.kngksDPYVkvslggdkkdqkkkTkvikkt + Vtv++A +L+ k ++++++sD+Y ++++g k+ T+v++kt mKIAA0857 56 VQVTVLRASGLRGKSSgAGSTSDAYTVIQVGR----EKYSTSVVEKT 98 .lNPvWNEtFtFevpppdlqetLeieVyDydrfgr............... + +P+W E++ Fe +p+++ d + r ++ + ++ + +++ mKIAA0857 99 qGCPEWCEECSFE--LPPGAL---------DGLLRaqeadagpapwasgp 137 ..................ddflGevs<-* + + ++ +++ + d+flG+++ mKIAA0857 138 naacelvlttmhrsligvDKFLGRAT 163 //