hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj02091/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0856  ( 1658 res)   mfj02091

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    39.1      6e-07   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4      13    50 ..     1    46 []     0.0  4.9e+02
WD40       2/4    1519  1554 ..     1    46 []    10.7       10
WD40       3/4    1558  1597 ..     1    46 []     9.5       16
WD40       4/4    1604  1646 ..     1    46 []    19.1     0.46

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 13 to 50: score 0.0, E = 4.9e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  l+++ +g  +     s+++  dg        +++ + D+  +++
   mKIAA0856    13    SiDLVSSVDGTPS--LPVSLSWVRDG--------ILVVGmDCEMHVY 49   

                   d<-*
                       
   mKIAA0856    50 A    50   

WD40: domain 2 of 4, from 1519 to 1554: score 10.7, E = 10
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t    r l+       V  ++ +p +      ++ ++g +Dg++r++
   mKIAA0856  1519    TvLMKRNLH------NVKRMTSHPVH------QYYLTGAqDGSVRMF 1553 

                   d<-*
                   +   
   mKIAA0856  1554 E    1554 

WD40: domain 3 of 4, from 1558 to 1597: score 9.5, E = 16
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++l++  ++ ++  +Vt + f++ g      n   ++++ g + +W
   mKIAA0856  1558    PqQLVCFRQAGNA--RVTRLYFNSQG------NKCGVADgEGFLSIW 1596 

                   d<-*
                       
   mKIAA0856  1597 Q    1597 

WD40: domain 4 of 4, from 1604 to 1646: score 19.1, E = 0.46
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt...i
                      ++k+ +++++H++  + ++ af  ++      +l+a++++ + ++++
   mKIAA0856  1604    NpKPYMSWQCHSK--ATSDFAFITSS------SLVATSGhSNDnrnV 1642 

                   rlWd<-*
                   +lWd   
   mKIAA0856  1643 CLWD    1646 

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