hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh04022/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0854  ( 719 res)   mbh04022

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HOX      Homeodomain                                    139.8    2.8e-37   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HOX        1/4     146   207 ..     1    63 []    19.6   0.0039
HOX        2/4     322   384 ..     1    63 []    41.2  1.4e-07
HOX        3/4     413   474 ..     1    63 []    38.7  7.8e-07
HOX        4/4     511   573 ..     1    63 []    45.2  8.6e-09

Alignments of top-scoring domains:
HOX: domain 1 of 4, from 146 to 207: score 19.6, E = 0.0039
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +  k  s   +  +++ ++F+k pYP+ +e+  L +  + +e+ +++
   mKIAA0854   146    NTTKYNS-ALDTNATMINSFNKFPYPTQAELSWLTAASKHPEEHIRI 191  

                   WFQNRRakwkrqekkk<-*
                   WF  +R k+  ++ ++   
   mKIAA0854   192 WFATQRLKHGISWSPE    207  

HOX: domain 2 of 4, from 322 to 384: score 41.2, E = 1.4e-07
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      ++ +    t+ Q++ L+++F ++++P+ +e  +L + +gL ++ +k 
   mKIAA0854   322    TPASDRKKTKLQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKK 368  

                   WFQNRRakwkrqekkk<-*
                   WF+ +R+++ r   +    
   mKIAA0854   369 WFSDHRYRCQRGIVHI    384  

HOX: domain 3 of 4, from 413 to 474: score 38.7, E = 7.8e-07
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +++ +   ++ Ql++LE++F k+ +P+ +e e+L  e++L++r +  
   mKIAA0854   413    PQKFKE-KSQGQLKTLEDSFLKSSFPTQAEVERLRVETKLSRREIDS 458  

                   WFQNRRakwkrqekkk<-*
                   WF+ RR+    +e++    
   mKIAA0854   459 WFSERRKLRDSMEQAV    474  

HOX: domain 4 of 4, from 511 to 573: score 45.2, E = 8.6e-09
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      ++ +  + ++eQ++ L+  F+++++P+++e ++LA+++gL ++ +  
   mKIAA0854   511    SPSSAIVQNQEQVHLLRSTFARTQWPTPQEYDQLAAKTGLVRTEIVR 557  

                   WFQNRRakwkrqekkk<-*
                   WF+  R+ +k    ++   
   mKIAA0854   558 WFKENRCLLKTGTLSW    573  

//