hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh04022/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0854  ( 719 res)   mbh04022

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Homeobox Homeobox domain                                 15.6    5.9e-05   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Homeobox   1/3     326   379 ..     1    57 []    15.7  5.8e-05
Homeobox   2/3     415   468 ..     1    57 []     7.7  0.00057
Homeobox   3/3     512   568 ..     1    57 []     0.4   0.0046

Alignments of top-scoring domains:
Homeobox: domain 1 of 3, from 326 to 379: score 15.7, E = 5.8e-05
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                       rk    t+ Q+  L++ F +++ P+ +e  +L + +gL  + +k W
   mKIAA0854   326    DRKK---TKLQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKW 369  

                   FQNRRaKwKk<-*
                   F  +R+++ +   
   mKIAA0854   370 FSDHRYRCQR    379  

Homeobox: domain 2 of 3, from 415 to 468: score 7.7, E = 0.00057
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      + k    ++ Ql++LE  F k++ P+ +e e+L  +++L+ r +  W
   mKIAA0854   415    KFKE--KSQGQLKTLEDSFLKSSFPTQAEVERLRVETKLSRREIDSW 459  

                   FQNRRaKwKk<-*
                   F  RR K +    
   mKIAA0854   460 FSERR-KLRD    468  

Homeobox: domain 3 of 3, from 512 to 568: score 0.4, E = 0.0046
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                        +  +  +eQ+  L   F++++ P+++e  +LA+k+gL  + +  W
   mKIAA0854   512    PSSAIVQNQEQVHLLRSTFARTQWPTPQEYDQLAAKTGLVRTEIVRW 558  

                   FQNRRaKwKk<-*
                   F   R   K    
   mKIAA0854   559 FKENRCLLKT    568  

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