hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/meh/meh00434/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0852  ( 1035 res)   meh00434

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
zf-CW     CW-type Zinc Finger                            84.5    2.2e-21   1
HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90    14.6      0.014   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
HATPase_c   1/1      29   127 ..     1   127 []    14.6    0.014
zf-CW       1/1     499   548 ..     1    55 []    84.5  2.2e-21

Alignments of top-scoring domains:
HATPase_c: domain 1 of 1, from 29 to 127: score 14.6, E = 0.014
                   *->gdedrLrqvlsNLldNAikhapaggeitvrlerdg...drlritVeD
                      +  ++L  +l +L+dNA ++ ++  +i++ +er+++ ++++ +   D
   mKIAA0852    29    TTHEFLFGALAELVDNARDADAT--RIDIYAERREdlrGGFMLCFLD 73   

                   nGpGIppehkisiedleriFepFyrtdgpsaesladsr.rkigGGLtGLG
                   +G G++p       d + + + F+++ +         r+ ++ +      
   mKIAA0852    74 DGAGMDP------SDAASVIQ-FGKSAK---------RtPESTQ------ 101  

                   LaivkelvelhgGtitvesepggGttftltlPla<-*
                          + ++g  ++  s    G  f+l  +++   
   mKIAA0852   102 -------IGQYGNGLKSGSM-RIGKDFILFTKKE    127  

zf-CW: domain 1 of 1, from 499 to 548: score 84.5, E = 2.2e-21
                   *->dfWVQCDPdClKWRkLPtelnyedIREnllpdkWtCsmnpwdplgns
                      ++++QCD +ClKWR+LP++l+ +   E+++pd+W+Csmnp dp++++
   mKIAA0852   499    PTTIQCD-LCLKWRTLPFQLSSV---ETDYPDTWVCSMNP-DPEQDR 540  

                   Csdpeele<-*
                   C+++e ++   
   mKIAA0852   541 CEASEQKQ    548  

//