hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00089/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0851  ( 611 res)   mbh00089

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Syja_N   SacI homology domain                           576.8   1.4e-169   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Syja_N     1/1      81   376 ..     1   366 []   576.8 1.4e-169

Alignments of top-scoring domains:
Syja_N: domain 1 of 1, from 81 to 376: score 576.8, E = 1.4e-169
                   *->iyGllGlIkLkggdvmLyYLivITgkskVGqigpghaIYkitdvdfi
                      i+G+lG+I+L++g    +YL+vIT+k+kVG+ + +ha+++ td+d++
   mKIAA0851    81    IFGILGTIHLVAG----NYLVVITKKMKVGECF-NHAVWRATDFDVL 122  

                   slnndsvdetdiekkDEarylkihPdgisTdtqeklpkhPcslLkkvLst
                   s++++++++tdi+++D++++l                     +L++vLs 
   mKIAA0851   123 SYKKTMLHLTDIQLQDNKTFLA--------------------MLNHVLSM 152  

                   gtFYFSytyDltntLQrnskvlraplenlessvdradesifdiITdyner
                   ++FYFS+tyDlt+tLQr+s+++  p+++++s ++rad+           r
   mKIAA0851   153 DGFYFSTTYDLTHTLQRLSNTS--PEFQEMSLLERADQ-----------R 189  

                   FvWNsfLleelinfRshLdneekqqlnverFllpvIhGfikqaslyvngk
                   FvWN++Ll+el            +q++v+rF lpv+hGfi+++s+++ngk
   mKIAA0851   190 FVWNGHLLRELS-----------AQPEVHRFALPVLHGFITMHSCSINGK 228  

                   tisltLISRRStkRAGTRFlkRGvnddGhVANFVETEQIVydsdskseka
                   +++++LISRRS++RAG+R+++RG++++Gh+ANFVETEQIV++s+      
   mKIAA0851   229 YFDWILISRRSCFRAGVRYYVRGIDSEGHAANFVETEQIVHYSGNRA--- 275  

                   rysSFVQvRGSIPLFWeQdvegsnLsyKPlivlrsveatapafdrHFddl
                      SFVQ+RGSIP+FW+Q   ++nL+yKP +++ +v +++++f+rHFd++
   mKIAA0851   276 ---SFVQTRGSIPIFWSQ---RPNLKYKPHPQISKVANHMDGFQRHFDSQ 319  

                   kqrYGnpivIvNLiktkkekEkplsklyeeflkaseylnsflpeeekiry
                   + +YG ++vI+NL++  k++Ekpl++++++++++++   s++     iry
   mKIAA0851   320 VIIYG-KQVIINLVNH-KGSEKPLEQTFANMVSSLG---SGM-----IRY 359  

                   tsFDFHkeckqmnmswdrl<-*
                   + FDFHkeck+m  +wdrl   
   mKIAA0851   360 IAFDFHKECKNM--RWDRL    376  

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