hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01355/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0850  ( 644 res)   mph01355

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        99.7    3.4e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      34   131 ..     1   114 []    99.7  3.4e-25

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 34 to 131: score 99.7, E = 3.4e-25
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv+l+v g         ++  a  H+avLa+c   Spy+ ++f+s+
   mKIAA0850    34    CDVRLQVCG---------HEMLA--HRAVLACC---SPYLFEIFNSd 66   

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                   +++++ +++ ldD       +pea++ lLn+ Yt +l  ++e    v+++
   mKIAA0850    67 sdphgvshVKLDD------LNPEAVEVLLNYAYTaQLKADKE---LVKDV 107  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                     +A++l    ++++++++C ++ll++    
   mKIAA0850   108 YSAAKKL----KMDrVKQVCGDYLLSRM    131  

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