hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mph/mph01355/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0850 ( 644 res) mph01355 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 342.6 4.5e-99 6 Kelch_2 Kelch motif 153.0 5.2e-42 6 BTB BTB/POZ domain 104.3 2.4e-27 1 BACK BTB And C-terminal Kelch 13.7 0.00046 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 24 131 .. 1 135 [] 104.3 2.4e-27 BACK 1/1 136 235 .. 1 103 [] 13.7 0.00046 Kelch_1 1/6 359 404 .. 1 45 [] 63.1 6.2e-15 Kelch_2 1/6 359 404 .. 1 54 [] 22.8 0.0081 Kelch_1 2/6 406 452 .. 1 45 [] 48.3 1.7e-10 Kelch_2 2/6 406 452 .. 1 54 [] 29.9 5.7e-05 Kelch_1 3/6 454 501 .. 1 45 [] 60.0 5.1e-14 Kelch_2 3/6 454 501 .. 1 54 [] 25.3 0.0014 Kelch_1 4/6 503 548 .. 1 45 [] 63.8 3.6e-15 Kelch_2 4/6 503 548 .. 1 54 [] 28.9 0.00012 Kelch_1 5/6 550 595 .. 1 45 [] 58.9 1.1e-13 Kelch_2 5/6 550 595 .. 1 54 [] 19.2 0.099 Kelch_1 6/6 597 642 .. 1 45 [] 58.6 1.4e-13 Kelch_2 6/6 597 642 .. 1 54 [] 28.7 0.00014 Alignments of top-scoring domains: BTB: domain 1 of 1, from 24 to 131: score 104.3, E = 2.4e-27 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ln+lr++g++cDV L+v g++ AH+avLa+cSpY ++ mKIAA0850 24 LNALRKSGQFCDVRLQVC--------GHEMLAHRAVLACCSPYLFEI 62 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F+++ + + vs ++ l+d +pe++e lL+++Yt+ l + mKIAA0850 63 FNSD------SDPHGVS-HVKLDDLNPEAVEVLLNYAYTAQLKAD----- 100 PssckseenvedlLalAadllqipslvdkCeefliksl<-* +e v d+ ++A ++l++++++++C ++l+ mKIAA0850 101 ------KELVKDVYSAA-KKLKMDRVKQVCGDYLLSRM 131 BACK: domain 1 of 1, from 136 to 235: score 13.7, E = 0.00046 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie C+ r+fA +g ++L++++d++i+++ l+++++eEFl L+ +L mKIAA0850 136 CISYRNFASCMGDSRLLNKVDAYIQEHLLQISEEEEFLKLPRLKLEV 182 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky L+ D + ps +++ v++Wv+ + + l eL++ V s + mKIAA0850 183 MLE-DNVCLPSNGKLYTKVINWVQRSIWENGDSLEELMEEVQTLYYSAD- 230 Llevve<-* + + mKIAA0850 231 -HKLLD 235 Kelch_1: domain 1 of 6, from 359 to 404: score 63.1, E = 6.2e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rsg g + ++gk+ ++GGy+ +++l++ve+YDp t+ W++l++m+ mKIAA0850 359 ARSGLGTAEMNGKLIAAGGYNReECLRTVECYDPHTDHWSFLAPMR 404 -* mKIAA0850 - - Kelch_2: domain 1 of 6, from 359 to 404: score 22.8, E = 0.0081 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ ++ ++gkl+ GG+ n e ++++ ++dp t +W mKIAA0850 359 ARSGLGTAEMNGKLIAAGGY--------NREECLRTVECYDPHTDHW 397 eklpalp<-* + l+++ mKIAA0850 398 SFLAPMR 404 Kelch_1: domain 2 of 6, from 406 to 452: score 48.3, E = 1.7e-10 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp pR+++ ++vl g++Yv+GG++g++ l++ e+YDp + Wt++p+++ mKIAA0850 406 PRARFQMAVLMGQLYVVGGSNGhsDDLSCGEMYDPNIDDWTPVPELR 452 <-* mKIAA0850 - - Kelch_2: domain 2 of 6, from 406 to 452: score 29.9, E = 5.7e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr++ ++v+ g+lyvvGGs +++ +d+s+ + +dp++ W mKIAA0850 406 PRARFQMAVLMGQLYVVGGS-----NGHSDDLSCGEM--YDPNIDDW 445 eklpalp<-* +++p l mKIAA0850 446 TPVPELR 452 Kelch_1: domain 3 of 6, from 454 to 501: score 60.0, E = 5.1e-14 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm R++agv++l+gk+Y++GG+d+ +++ l++++v+Dp+t++Wt ++++ mKIAA0850 454 NRCNAGVCALNGKLYIVGGSDPygqKGLKNCDVFDPVTKSWTSCAPL 500 p<-* + mKIAA0850 501 N 501 Kelch_2: domain 3 of 6, from 454 to 501: score 25.3, E = 0.0014 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ ++ ++gkly+vGGs + +g +++ +d+ +dp t++W mKIAA0850 454 NRCNAGVCALNGKLYIVGGS----DPYGQKGLKNCDV--FDPVTKSW 494 eklpalp<-* + +++l mKIAA0850 495 TSCAPLN 501 Kelch_1: domain 4 of 6, from 503 to 548: score 63.8, E = 3.6e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+ +v+ l+g++Y+iGG + ++ln+ve+Y+pe+ntWt +++m+ mKIAA0850 503 RRHQSAVCELGGYLYIIGGAESwNCLNTVERYNPENNTWTLIAPMN 548 -* mKIAA0850 - - Kelch_2: domain 4 of 6, from 503 to 548: score 28.9, E = 0.00012 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++a++ +gg ly++GG+ + ++++ +++pe n+W mKIAA0850 503 RRHQSAVCELGGYLYIIGGA--------ESWNCLNTVERYNPENNTW 541 eklpalp<-* + ++++ mKIAA0850 542 TLIAPMN 548 Kelch_1: domain 5 of 6, from 550 to 595: score 58.9, E = 1.1e-13 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+gagv+vldgk++v GG+dg+ + ++ve+YDp+ n+W+++ +m+ mKIAA0850 550 ARRGAGVAVLDGKLFVGGGFDGsHAISCVEMYDPTRNEWKMMGNMT 595 -* mKIAA0850 - - Kelch_2: domain 5 of 6, from 550 to 595: score 19.2, E = 0.099 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r + ++v++gkl+v GG+ +g++++s + +dp n+W mKIAA0850 550 ARRGAGVAVLDGKLFVGGGF--------DGSHAISCVEMYDPTRNEW 588 eklpalp<-* + + + mKIAA0850 589 KMMGNMT 595 Kelch_1: domain 6 of 6, from 597 to 642: score 58.6, E = 1.4e-13 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pRs+ag++++++ iY++GG+dg+++ln+vevY+p +n+W++ + mKIAA0850 597 PRSNAGITTVGNTIYAVGGFDGnEFLNTVEVYNPQSNEWSPYTKIF 642 -* mKIAA0850 - - Kelch_2: domain 6 of 6, from 597 to 642: score 28.7, E = 0.00014 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr++ ++++g+ +y vGG+ +g+e+++++ v++p++n+W mKIAA0850 597 PRSNAGITTVGNTIYAVGGF--------DGNEFLNTVEVYNPQSNEW 635 eklpalp<-* ++ +++ mKIAA0850 636 SPYTKIF 642 //