hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh04492/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0849 ( 999 res) mbh04492 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CAP_GLY CAP-Gly domain 236.3 4.2e-67 3 UCH Ubiquitin carboxyl-terminal hydrolase -15.6 8.4e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CAP_GLY 1/3 174 250 .. 1 74 [] 86.7 4.6e-22 CAP_GLY 2/3 279 350 .. 1 74 [] 63.7 4e-15 CAP_GLY 3/3 515 583 .. 1 74 [] 90.7 2.9e-23 UCH 1/1 632 990 .. 1 273 [] -15.6 8.4e-05 Alignments of top-scoring domains: CAP_GLY: domain 1 of 3, from 174 to 250: score 86.7, E = 4.6e-22 *->iGsRVevgg.ggeedrrGtVRYvGetdfapGtn.iWvGVELDePlrG +Gs V+v ++gee ++G+VR+ G++ + +++i+ GVEL+e+ rG mKIAA0849 174 VGSPVKVQLrSGEEKFPGVVRFRGPLLAERTVSgIFFGVELLEEGRG 220 KN..DGsvkGvrYFqCegpkyGiFvrpskve<-* +DG ++G+++FqC+ + +G+Fv ++k+e mKIAA0849 221 QGftDGVYQGKQLFQCD-EDCGVFVALDKLE 250 CAP_GLY: domain 2 of 3, from 279 to 350: score 63.7, E = 4e-15 *->iGsRVevggggeedrrGtVRYvGetdfap..GtniWvGVELDePlrG i+sRV +++g e ++ GtV ++ ++++++ G+ +vGV++D+P+ G mKIAA0849 279 INSRVSLKVG-ESTESGTVIFCDVLPGKEslGY--FVGVDMDNPI-G 321 KNDGsvkGvrY..FqCegpkyGiFvrpskve<-* ++DG+++Gv++ +F + + i+++++++ mKIAA0849 322 NWDGRFDGVQLcsFASV-EST-ILLHINDII 350 CAP_GLY: domain 3 of 3, from 515 to 583: score 90.7, E = 2.9e-23 *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN +Gs ev+ +++++G++R++G++++ +++ +G+EL+++++G+ mKIAA0849 515 VGSLAEVKE--NPPFYGVIRWIGQPPGLSDV--LAGLELEDECAGCT 557 DGsvkGvrYFqCegpkyGiFvrpskve<-* DG+++G+rYF+C k+++Fv++ +++ mKIAA0849 558 DGTFRGTRYFTCA-LKKALFVKLKSCR 583 UCH: domain 1 of 1, from 632 to 990: score -15.6, E = 8.4e-05 RF xxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfh.ipplrdyllsdsyesein.... + G++ N+CY+ S+L cLf+ l + ll+ + + i+ ++ mKIAA0849 632 GKKKGIQGHYNSCYLDSTLFCLFAfSSALDTVLLRPKEKNDIEyyse 678 RF xxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxx ........esnplgskgsllcaladLfnalqsg.yksvvpsplkflqfkt +++ +++ npl g ++ + +++++ + + ++++ mKIAA0849 679 tqellrteIVNPLRIYGYVCATKIMKLRKILEKvEAASGFTSEEK----- 723 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x xxx tlgkineefsgymQqDAhEFllfLLdgLhedlnrvnkkpytepe.s.dkr D +EFl++L+ h++l p+++ +++ k+ mKIAA0849 724 ---------------DPEEFLNILF---HDILRV---EPLLKIRsAgQKV 752 RF xx xxx xxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx pd.kaa.eawknhslrneslitdlFqGqles.rlkisrLPpiLiihLKRF +d ++ +++++++++ + i++l++ ++ ++ lk+ +P +Lii+ RF mKIAA0849 753 QDcNFYqIFMEKNEKVGVPTIQQLLEWSFINsNLKFAEAPSCLIIQMPRF 802 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx kydgetgmnkKindkVefPleLdlssyctae................... d K+ +k+ + leL++++++ + + + ++ + + mKIAA0849 803 GKD------FKLFKKIFPSLELNITDLLEDTprqcricgglamyecrecy 846 RF .................................................. ++++ + ++ ++ ++ +++ + ++ +++ ++ + +++ ++ + ++ mKIAA0849 847 ddpdisagkikqfcktcstqvhlhprrlnhsyhpvslpkdlpdwdwrhgc 896 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx .pplkYeLyaVvvHsGsslsgGHYiayikkkkknnkWykfDDekVsevse p+ k eL+aV++ s HY+a++k k+++ W+ fD ++ + mKIAA0849 897 iPCQKMELFAVLCIETS-----HYVAFVKYGKDDSAWLFFDSMADRDGGQ 941 RF xxxxx xxxxxxxxxx eevle...................................rsssAYiLFY + ++ ++ ++ ++ ++ + + ++ ++ ++++ ++ ++ +AY+++Y mKIAA0849 942 NG-FNipqvtpcpevgeylkmsledlhsldsrriqgcarrLLCDAYMCMY 990 RF <-* mKIAA0849 - - //