hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mia/mia12084/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0847  ( 1247 res)   mia12084

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Pkinase     Protein kinase domain                        76.1    7.1e-19   1
Pkinase_Tyr Protein tyrosine kinase                     -97.2    7.9e-06   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Pkinase_Tyr   1/1      67   308 ..     1   272 []   -97.2  7.9e-06
Pkinase       1/1      67   325 ..     1   287 []    76.1  7.1e-19

Alignments of top-scoring domains:
Pkinase_Tyr: domain 1 of 1, from 67 to 308: score -97.2, E = 7.9e-06
                   *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLkeigasseeie
                       k ++k+G G FGe+y +        t+  VA K+    +a ++   
   mKIAA0847    67    WKVLRKIGGGGFGEIYDALDM----LTRENVALKVE---SAQQP--- 103  

                   redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL
                   ++ +  E++++kkl   +++ r++G+    ++      y+V+ + +g +L
   mKIAA0847   104 KQVLKMEVAVLKKLQGKDHVCRFIGCGRN-DRF----NYVVMQL-QGRNL 147  

                   ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDL........
                    d  r++ +++ +t+++ l    Qi +  e  +s +f HRD+++++   +
   mKIAA0847   148 ADLRRSQ-SRGTFTISTTLRLGKQILESIESIHSVGFLHRDIkpsnfamg 196  

                   ....AARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPv.....
                   + ++ +R c           DFGLaR+        + + g   P +   +
   mKIAA0847   197 rfpsTCRKCFML--------DFGLARQF-------TNSCGDVRPPravag 231  

                   .....kWmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsnee
                    +++ +  +  + ++++     D WS   +L E +  G+ P +  +++ e
   mKIAA0847   232 frgtvRYASINAHRNREMGRHDDLWSLFYMLVEFVV-GQLP-WRKIKDKE 279  

                   vlellyedGyRLprPenCPdelYdlMlqCWaedPedRPtFselverL<-*
                    +  + +++y                    ++ P   P Fs+ + ++   
   mKIAA0847   280 QVGSI-KERYDHRLML--------------KHLP---PEFSTFLDHI    308  

Pkinase: domain 1 of 1, from 67 to 325: score 76.1, E = 7.1e-19
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      +++l+k+G G+fG+ y a +  t++ VA+K+ + +  k   ++    
   mKIAA0847    67    WKVLRKIGGGGFGEIYDALDMLTRENVALKVESAQQPKQVLKM---- 109  

                   rsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrlldLfdyls
                     E+++lk+L++ ++++r+i++ ++++  y+V+ + +    l+dL     
   mKIAA0847   110 --EVAVLKKLqGKDHVCRFIGCGRNDRFNYVVMQLQGRN--LADLR---- 151  

                   etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldeng
                   +++++g++  +  +  +  +Qil+ +e +Hs g++HRD+KP+N+ + + +
   mKIAA0847   152 RSQSRGTF--TISTTLRLGKQILESIESIHSVGFLHRDIKPSNFAMGRFP 199  

                   vvda.flKiaDFGlAkkls.....t.sss.lttfvGTpwYmAPEvllggn
                    ++ +++ + DFGlA+++ ++ ++ ++ +   +f GT +Y++   ++ ++
   mKIAA0847   200 STCRkCFML-DFGLARQFTnscgdVrPPRaVAGFRGTVRYASINAHR-NR 247  

                   gygtkvDvWSlGvilyelltGkpPFsgev.q.ds.ldqlqlirkilgppl
                   + g+  D WSl  +l e++ G++P++ ++++++   + +++++  l+ + 
   mKIAA0847   248 EMGRHDDLWSLFYMLVEFVVGQLPWR-KIkDkEQvGSIKERYDHRLMLKH 296  

                   efdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHP
                     +++                 ++++d i+++   D    +   ++l + 
   mKIAA0847   297 LPPEF-----------------STFLDHISSL---DYFTKPD-YQLLTS- 324  

                   wf<-*
                    +   
   mKIAA0847   325 -V    325  

//