hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj18276/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0846 ( 693 res) mfj18276 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RasGEF RasGEF domain 130.6 2.9e-35 1 C1_1 Phorbol esters/diacylglycerol binding domain 71.1 2.3e-17 1 efhand EF hand 42.7 8.4e-09 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RasGEF 1/1 148 334 .. 1 227 [] 130.6 2.9e-35 efhand 1/2 426 454 .. 1 29 [] 24.9 0.0018 efhand 2/2 455 483 .. 1 29 [] 18.2 0.2 C1_1 1/1 497 549 .. 1 55 [] 71.1 2.3e-17 Alignments of top-scoring domains: RasGEF: domain 1 of 1, from 148 to 334: score 130.6, E = 2.9e-35 *->LllD...plelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkk Ll+D+ +p elA+ LT lEh++f++I+ + v+ mKIAA0846 148 LLFDhlePIELAEHLTFLEHKSFRRISFTDYQS--------YVIHGC 186 sfkgkeerspnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkR ++++ p++ i++fN + +v ++l++ ++ R mKIAA0846 187 --LENN---PTLERSIALFNGISKWVQLMVLSKP-----------SAQQR 220 aeviqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqsl aevi kfI+VA+++++L+NFn+l+a++ +L++s+I+RLk+T + ++++ mKIAA0846 221 AEVITKFINVAQKLLQLKNFNTLMAVVGGLSHSSISRLKDTHSHLSSEVT 270 klIfeeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPCVPFfGv k+ + e+ +L++s++N+ nyR+ ++ + +P +Gv mKIAA0846 271 KN-WNEMTELVSSNGNYCNYRKAFADCDGF-------------KIPILGV 306 YLsDLtfleeGnpdyleekKINtnlvNFsKrrk<-* L+DL +++ pd e n+vN K+++ mKIAA0846 307 HLKDLIAVHVIFPDWME-----ENKVNVVKMHQ 334 efhand: domain 1 of 2, from 426 to 454: score 24.9, E = 0.0018 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* ++ +F+ +D D+DG+Is e+f ++ +++ mKIAA0846 426 LVESVFRNYDHDHDGYISQEDFESIAANF 454 efhand: domain 2 of 2, from 455 to 483: score 18.2, E = 0.2 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* + + F ++DkD+DG Is++E++a++ + mKIAA0846 455 PFLDSFCVLDKDQDGLISKDEMMAYFLRA 483 C1_1: domain 1 of 1, from 497 to 549: score 71.1, E = 2.3e-17 *->HhFvhrwnfkqptfCdhCgellwgslgkqGlkCswCklnvHkrChek H+F++ n+ +ptfC+hC+ +lwg ++kqG+kC +C+ n+Hk+C + mKIAA0846 497 HNFQEM-NYLKPTFCEHCAGFLWG-IIKQGYKCKDCGANCHKQCKDL 541 VppeCgcg<-* ++ C+ mKIAA0846 542 LVLACRRL 549 //