hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh00862/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0845 ( 1046 res) mbh00862 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Filament Intermediate filament protein 476.0 3e-139 1 DUF1388 Repeat of unknown function (DUF1388) 124.7 1.7e-33 14 Phage_GP20 Phage minor structural protein GP20 -46.5 0.18 1 DUF827 Plant protein of unknown function (DUF827) -117.6 0.74 1 Extensin_2 Extensin-like region -127.2 0.16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF827 1/1 70 290 .. 1 551 [] -117.6 0.74 Filament 1/1 104 420 .. 1 359 [] 476.0 3e-139 Phage_GP20 1/1 312 439 .. 1 162 [] -46.5 0.18 DUF1388 1/14 529 556 .. 1 28 [] 40.1 5.1e-08 DUF1388 2/14 559 586 .. 1 28 [] 32.3 1.1e-05 DUF1388 3/14 589 616 .. 1 28 [] 36.8 5.1e-07 DUF1388 4/14 619 646 .. 1 28 [] 34.7 2.1e-06 DUF1388 5/14 649 676 .. 1 28 [] 38.3 1.8e-07 DUF1388 6/14 679 706 .. 1 28 [] 35.5 1.3e-06 DUF1388 7/14 707 730 .. 1 28 [] 24.4 0.0026 DUF1388 8/14 735 764 .. 1 28 [] 17.7 0.27 DUF1388 9/14 767 795 .. 1 28 [] 4.0 1.2e+02 DUF1388 10/14 799 828 .. 1 28 [] 6.9 49 Extensin_2 1/1 509 860 .. 1 385 [] -127.2 0.16 DUF1388 11/14 840 869 .. 1 28 [] -9.0 6.5e+03 DUF1388 12/14 870 899 .. 1 28 [] -12.3 1.6e+04 DUF1388 13/14 942 969 .. 1 28 [] -7.2 3.8e+03 DUF1388 14/14 974 1001 .. 1 28 [] -13.4 2.2e+04 Alignments of top-scoring domains: DUF827: domain 1 of 1, from 70 to 290: score -117.6, E = 0.74 *->sAPFeSVKEAVtlFGgiafWKahyatRLkklqsserrktvsfedVsd ++P ++F+g+a++ + L l++ ++ +v mKIAA0845 70 ASP--------SRFRGAASSTDS----LDTLSNGPEGCVV------- 97 eetELekvqkeapelKkeLena..EreklqVLkELEsTKrtveeLklkLE + +a++E+e lq+L++ + ++++ ++ LE mKIAA0845 98 -----------------AAVAArsEKEQLQALNDRFA--GYIDKVRQ-LE 127 kaekeeqqAkqdsElAklRvEEmEqGiadeASVaaktqlEVAkEryisat mKIAA0845 - -------------------------------------------------- - sELdsvKeELekvrqeynslleEKdlAlkrAEEAvlaskvvekkveeLtk mKIAA0845 - -------------------------------------------------- - EliAtKeslEsahaaHleAeEerigiamekdqdreayekelkeAeeeLqr aH++ mKIAA0845 128 --------------AHNR-------------------------------- 131 LnqeldpELkkDlkakLdeasaeledLkeElaaykeSkikeEaevieeeg +L E aa + mKIAA0845 132 -------------------------SLEGEAAALRQ-------------- 142 eiaaqesshdimssvasitkELeeAKmnLeKaaeEekslrslveSLkqEL +++ + + EL e + + l ++ ++L++E mKIAA0845 143 -----------QQAGRAAMGELYE--REVREMRGAVLRLGAARGQLRLEQ 179 eeeKaeleelrqREgeasiavaSLeaELsRtksEIelvkskEkearEekm e +++ +rqR+ e E+ +rE mKIAA0845 180 EHLLEDIAHVRQRLDE-------------------------EARQRE--- 201 vElpkklqqasrEAeeaKkeAenareelrkakeEaEqaktalstaEkrLv eAe+a ++l + EaE+a++ l L mKIAA0845 202 -------------------EAEAAARALARFAQEAEAARVELQKKAQALQ 232 aArKeiEaAKaaEklAiaeIKaLqeseesqkndeiesSprsItisleEye eE mKIAA0845 233 ----------------------------------------------EECG 236 eLskraeEaEelvnfrvaealaqv.......EeakeseseiLeKLEeaek L++ + E v e+l q+++ + + a ++ ++ L+ +++ mKIAA0845 237 YLRRHHQE-------EVGELLGQIqgcgaaqAQAQAEARDALKC--DVTS 277 eieekKaaleeAl<-* + +e++a le+++ mKIAA0845 278 ALREIRAQLEGHA 290 Filament: domain 1 of 1, from 104 to 420: score 476.0, E = 3e-139 *->nEKeqmQnLNDRLAsYIdKVRfLEqqNkeLevkieelrqkqsrggpa +EKeq+Q LNDR+A YIdKVR+LE++N+ Le++ ++lrq+q++ mKIAA0845 104 SEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAG---- 146 svsrlyslYeteieeLRrqidqltnerarlqlEidnlrealedfrkKyed + + +++lYe+e +e+R+ +++l+++r++l lE ++l e+++++r+++ + mKIAA0845 147 R-AAMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDE 195 KeDLaaQnqlkdlEialntkeaeLaTaLeRqeaEndlvgLRaQiAklEsl E+++ R+eaE+ ++L mKIAA0845 196 -------------EARQ------------REEAEAAARAL---------- 210 aaRkdlDeaTLarvDLEnkvEsLqEElaFLKknHeEEvkeLqaqiqdtg. + +ea arv+L++k+++LqEE+ +L+++H+EEv eL +qiq+ g mKIAA0845 211 --ARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQGCGa 258 ...qvnVEmDaarqqEwklDLtkaLrEiRaQYEeiAeknrqeaEewYksK + q ++E ++a k+D t+aLrEiRaQ E +A ++ ++Eew++ + mKIAA0845 259 aqaQAQAEARDAL----KCDVTSALREIRAQLEGHAVQSTLQSEEWFRVR 304 leeLqtaaarngealrsaKeEitElRRqiQsLeiELqslksqnasLErql l L++aa+ n++a+rsa+eEitE+RRq+Q+++ EL++lks+++sLErq+ mKIAA0845 305 LDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKESLERQR 354 aElEeryeaelaqyqalisqlEeeLqqlreEMarqLrEYQeLLdVKlaLD ElE+r++a+ a yq++i+ql++eL+++++EMa+qLrEYQ+LL+VK+aLD mKIAA0845 355 SELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALD 404 iEIATYRKLLEGEEsR<-* iEIA+YRKLLEGEE+R mKIAA0845 405 IEIAAYRKLLEGEECR 420 Phage_GP20: domain 1 of 1, from 312 to 439: score -46.5, E = 0.18 *->deqinsVmalygkdveeAdKqqledvkaErDsLKsqlskrdeqIedL ++ + m + +++e + ql +E+++LKs+ ++ q L mKIAA0845 312 AKVNTDAMRSAQEEITE-YRRQLQARTTELEALKSTKESLERQRSEL 357 ke.nsgnseELkKqIeeLqeenkeleseaaAeLaetKkdsAVklAlkdak ++ ++ + +++I L +e + + e aA+L e + Vk+Al mKIAA0845 358 EDrHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALDI-- 405 ArnAkaikafidkDeieLdDdGkLkGLdEqikkLkESdpYLFakeepvGk a +++ +G +e G mKIAA0845 406 --EIAAYRKLL---------EG---------------------EECRIGF 423 kkspkilpgGNPkagg<-* ++sp l G Pk + mKIAA0845 424 GPSPFSLTEGLPKIPS 439 DUF1388: domain 1 of 14, from 529 to 556: score 40.1, E = 5.1e-08 *->eeaKsPeeaKsPgenKsPgEnKsPaenk<-* eeaKsP+eaKsPge+KsPgE+KsPae+k mKIAA0845 529 EEAKSPGEAKSPGEAKSPGEAKSPAEAK 556 DUF1388: domain 2 of 14, from 559 to 586: score 32.3, E = 1.1e-05 *->eeaKsPeeaKsPgenKsPgEnKsPaenk<-* +eaKsP+eaKsP+e KsP+E KsPae+k mKIAA0845 559 GEAKSPGEAKSPAEPKSPAEPKSPAEAK 586 DUF1388: domain 3 of 14, from 589 to 616: score 36.8, E = 5.1e-07 *->eeaKsPeeaKsPgenKsPgEnKsPaenk<-* +eaKsP++ KsPge+KsP E+KsPae+k mKIAA0845 589 AEAKSPATVKSPGEAKSPSEAKSPAEAK 616 DUF1388: domain 4 of 14, from 619 to 646: score 34.7, E = 2.1e-06 *->eeaKsPeeaKsPgenKsPgEnKsPaenk<-* +eaKsP+eaKsP+e KsPgE+KsPae k mKIAA0845 619 AEAKSPAEAKSPAEVKSPGEAKSPAEPK 646 DUF1388: domain 5 of 14, from 649 to 676: score 38.3, E = 1.8e-07 *->eeaKsPeeaKsPgenKsPgEnKsPaenk<-* +eaKsP+e KsP+e+KsP+E+KsP+e+k mKIAA0845 649 AEAKSPAEVKSPAEAKSPAEVKSPGEAK 676 DUF1388: domain 6 of 14, from 679 to 706: score 35.5, E = 1.3e-06 *->eeaKsPeeaKsPgenKsPgEnKsPaenk<-* + +KsP+eaKsP+ KsPgE+KsP+e+k mKIAA0845 679 AAVKSPAEAKSPAAVKSPGEAKSPGEAK 706 DUF1388: domain 7 of 14, from 707 to 730: score 24.4, E = 0.0026 *->eeaKsPeeaKsPgenKsPgEnKsPaenk<-* sP+eaKsP+e+KsP E+KsP+++k mKIAA0845 707 ----SPAEAKSPAEAKSPIEVKSPEKAK 730 DUF1388: domain 8 of 14, from 735 to 764: score 17.7, E = 0.27 *->eeaKsPeeaKsPgenKsP..gEnKsPaenk<-* e+aKsP+eaKsP+++KsP ++ K Pae+k mKIAA0845 735 EGAKSPAEAKSPEKAKSPvkEDIKPPAEAK 764 DUF1388: domain 9 of 14, from 767 to 795: score 4.0, E = 1.2e+02 *->eeaKsP..eeaKsPgenKsPgEnKsPaenk<-* e+aKsP +e+aK P+++K P +KsP++++ mKIAA0845 767 EKAKSPvkEGAKPPEKAK-PLDVKSPEAQT 795 DUF1388: domain 10 of 14, from 799 to 828: score 6.9, E = 49 *->eeaKsPeeaKsPgenKsPg..EnKsPaenk<-* eeaK P + + P++ KsP+++ +KsP++++ mKIAA0845 799 EEAKHPTDIRPPEQVKSPAkeKAKSPEKEE 828 Extensin_2: domain 1 of 1, from 509 to 860: score -127.2, E = 0.16 *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy + ++ s + ++++ k + +SP + p kSP + mKIAA0845 509 TSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPGEAKSPAEA 555 kSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpP..kyvYkSPPp kSP +k p +SP P kSP P kSP +++ kSP + mKIAA0845 556 KSPGEAKSPGEAKSPAEP----KSPAEP-----KSPAEAksPAEAKSPAT 596 Pv........ykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPv +++++ +++ kSP p kSP + kSp mKIAA0845 597 VKspgeakspSEAKSPAEAK----SPAEAKSPAEAKSPAEVKSPGEA--- 639 YkYkSPPPPp.yvYkspPpPvkkripyvYkSPPPPpP.YvYkSpPppvkk kSP P+++ +P+ vk p kSP + kSp ++ + mKIAA0845 640 ---KSPAEPKsPAEAKSPAEVKS--PAEAKSPAEVKSpGEAKSPAAVKSP 684 yiyksppppephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYk ksp + + + kSP + s+ e k + kSP k + k mKIAA0845 685 AEAKSPAAVKSP-GEAKSPGEAK-----SPAEAKSPAEAKSPIEVKSPEK 728 spsppkyVYkSpPpPvipykYkSPPPPkkkyspaPrkpyvYkSPPPPtyv +p k kSp p k kSP k+++ + p + kSP v mKIAA0845 729 AKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSP-----V 773 YkSpPpPykpptppkiyksPPPPtPvyvYkspPpippiksssppPvyvYk pP+k p ksP tPv P P+ k mKIAA0845 774 KEGAKPPEK--AKPLDVKSPEAQTPVQEEAKHPT-------DIRPPEQVK 814 SpPppvysPPPP..yvYssPPPPvyvynsaPvykksPPkhhYiYsSPPPp Sp + P ++ s P +ksP k PP mKIAA0845 815 SPAKEKAKSPEKeeAKTSEKVAPKK------EEVKSPVKEEVKAKEPPKK 858 hh<-* + mKIAA0845 859 VE 860 DUF1388: domain 11 of 14, from 840 to 869: score -9.0, E = 6.5e+03 *->eeaKsP..eeaKsPgenKsPgEnKsPaenk<-* ee+KsP +ee K + K+ +E+K+ + k mKIAA0845 840 EEVKSPvkEEVKAKEPPKKVEEEKTLPTPK 869 DUF1388: domain 12 of 14, from 870 to 899: score -12.3, E = 1.6e+04 *->eeaKsPeeaKsPgenKsP..gEnKsPaenk<-* eaK+ ++ P e+ +P+ +E+K+ ++k mKIAA0845 870 TEAKESKKDEAPKEAPKPkvEEKKETPTEK 899 DUF1388: domain 13 of 14, from 942 to 969: score -7.2, E = 3.8e+03 *->eeaKsPeeaKsPgenKsPgEnKsPaenk<-* e K+ +e+ + e +P E +P++++ mKIAA0845 942 ETTKTEAEDTKAKEPSKPTETEKPKKEE 969 DUF1388: domain 14 of 14, from 974 to 1001: score -13.4, E = 2.2e+04 *->eeaKsPeeaKsPgenKsPgEnKsPaenk<-* e+K e+K+ + K + K a+ k mKIAA0845 974 PEKKDTKEEKTTESRKPEEKPKMEAKVK 1001 //