hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01248/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0844  ( 432 res)   mbh01248

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          20.7      0.035   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/1      51    76 ..     1    24 []    20.7    0.035

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 1, from 51 to 76: score 20.7, E = 0.035
                   *->ykCpfdCg..ksFsrksnLkrHlrt.H<-*
                      ++Cp  Cg++++F++ s+L++Hl  +H   
   mKIAA0844    51    FRCP-RCGdhTRFRSLSSLRAHLEFsH    76   

//